Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0412
(773 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 171 4e-43
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 169 2e-42
01_07_0345 + 42877363-42878367 30 1.8
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 5.4
06_03_0543 + 21967787-21970261 28 7.2
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 28 7.2
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 7.2
05_04_0124 + 18232961-18236636,18236810-18237288,18237549-182376... 28 9.5
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032... 28 9.5
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 9.5
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 171 bits (417), Expect = 4e-43
Identities = 79/141 (56%), Positives = 101/141 (71%)
Frame = +2
Query: 254 RPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASY 433
RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++
Sbjct: 84 RPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESAL 143
Query: 434 VNIPVIALCNIRLPTKICGHCYPMQTKSSHSIGXMWWLLAREVLRLRGVLPRDQRWDVVV 613
NIP IA C+ P + P K +SIG ++WLLAR VL++RG + +WDV+V
Sbjct: 144 GNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMV 203
Query: 614 DLFFYRDPEESEKDEQQAKEQ 676
DLFFYRDPEE+++ E++A Q
Sbjct: 204 DLFFYRDPEEAKEQEEEAPAQ 224
Score = 102 bits (244), Expect = 4e-22
Identities = 63/167 (37%), Positives = 88/167 (52%), Gaps = 1/167 (0%)
Frame = +3
Query: 6 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 185
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 186 KLVLXARAVVAIENPADVFVISSGPSVSVLY*SLXRTPVLRLLRDVSHQVLLLTRSKLHS 365
KL L AR +VAIENP D+ V S+ P + + H T S
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAG-RHTPGTFTNQLQTS 119
Query: 366 VNLVS*LYWTLHKTIN-PLLKLHMSTFL*LLCATSDSPLRFVDIAIP 503
+ L T +T + P+ + + + +DSP+R+VDI IP
Sbjct: 120 FSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIP 166
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 169 bits (412), Expect = 2e-42
Identities = 81/144 (56%), Positives = 102/144 (70%)
Frame = +2
Query: 254 RPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASY 433
RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++
Sbjct: 84 RPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESAL 143
Query: 434 VNIPVIALCNIRLPTKICGHCYPMQTKSSHSIGXMWWLLAREVLRLRGVLPRDQRWDVVV 613
NIP IA C+ P + P K SIG ++WLLAR VL++RG + +WDV+V
Sbjct: 144 GNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMV 203
Query: 614 DLFFYRDPEESEKDEQQAKEQAVV 685
DLFFYRDPEE++ EQ+ +E A+V
Sbjct: 204 DLFFYRDPEEAK--EQEEEEAALV 225
Score = 99.1 bits (236), Expect = 3e-21
Identities = 60/156 (38%), Positives = 83/156 (53%), Gaps = 1/156 (0%)
Frame = +3
Query: 39 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLXARAVVA 218
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL L AR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 219 IENPADVFVISSGPSVSVLY*SLXRTPVLRLLRDVSHQVLLLTRSKLHSVNLVS*LYWTL 398
IENP D+ V S+ P + + H T S + L T
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAG-RHTPGTFTNQLQTSFSEPRLLILTD 130
Query: 399 HKTIN-PLLKLHMSTFL*LLCATSDSPLRFVDIAIP 503
+T + P+ + + + +DSP+R+VDI IP
Sbjct: 131 PRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIP 166
>01_07_0345 + 42877363-42878367
Length = 334
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +1
Query: 433 CQHSCDCFVQHQTPH*DLWTLLSHAN 510
C HSCD FV H PH D L H N
Sbjct: 11 CCHSCDSFV-HPHPHLDAAVLCPHCN 35
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 106 TFSAPRWVVAASILVTSSSLRASTSNP 26
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 539 WWLLAREVLRLRGVLPRDQRWDVVVDLF 622
W++L RE +LRGV P + ++++ + F
Sbjct: 474 WFILRREAKQLRGVWPAEAGYEMIANHF 501
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -2
Query: 634 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHXTNRVG 518
V + Q NIP LVT TTK + F PPH +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 113 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 220
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>05_04_0124 + 18232961-18236636,18236810-18237288,18237549-18237629,
18238033-18238041,18238096-18238248
Length = 1465
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 442 SCDCFVQHQTPH*DLWTLLS 501
SCDCF+QH+ LW +S
Sbjct: 993 SCDCFIQHEGLQSPLWFWIS 1012
>05_04_0122 + 18198594-18202269,18202551-18202591,18203273-18203281,
18203336-18203551,18204257-18204361,18204761-18204919
Length = 1401
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 442 SCDCFVQHQTPH*DLWTLLS 501
SCDCF+QH+ LW +S
Sbjct: 993 SCDCFIQHEGLQSPLWFWIS 1012
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 149 WYPCDQLASYLGKTCSGCSCCRSHREP 229
++PC +GKT S C + HR P
Sbjct: 615 YHPCQPTVRLMGKTVSVCERSKEHRVP 641
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,646,787
Number of Sequences: 37544
Number of extensions: 535848
Number of successful extensions: 1496
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1494
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -