Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0412
(773 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0) 208 4e-54
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.15
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5) 31 1.4
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0) 29 3.2
SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3) 29 4.2
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26) 29 4.2
>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
Length = 328
Score = 208 bits (508), Expect = 4e-54
Identities = 95/138 (68%), Positives = 110/138 (79%)
Frame = +2
Query: 254 RPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASY 433
RP+GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPRLLIV DP DHQP+TEASY
Sbjct: 80 RPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCDPRIDHQPVTEASY 139
Query: 434 VNIPVIALCNIRLPTKICGHCYPMQTKSSHSIGXMWWLLAREVLRLRGVLPRDQRWDVVV 613
VNIPVIA CN P + P K HSIG M+WLLAREVLR+RG + R W+++
Sbjct: 140 VNIPVIAFCNTDSPLRHVDVAIPCNNKGIHSIGLMFWLLAREVLRMRGSISRALPWEIMP 199
Query: 614 DLFFYRDPEESEKDEQQA 667
DL+FYRDPEE+EK+EQ A
Sbjct: 200 DLYFYRDPEEAEKEEQAA 217
Score = 120 bits (288), Expect = 2e-27
Identities = 73/167 (43%), Positives = 98/167 (58%), Gaps = 4/167 (2%)
Frame = +3
Query: 18 MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 197
MSGGLD+L L EEDV K LAA HLGA N +FQME YVYKR++DG ++IN+++TWEKL+L
Sbjct: 1 MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60
Query: 198 XARAVVAIENPADVFVISS---GPSVSVLY*S-LXRTPVLRLLRDVSHQVLLLTRSKLHS 365
AR +V IENPADV VIS+ G + Y S TP+ + + +
Sbjct: 61 AARIIVTIENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPR 120
Query: 366 VNLVS*LYWTLHKTINPLLKLHMSTFL*LLCATSDSPLRFVDIAIPC 506
+ +V H+ + +++ C T DSPLR VD+AIPC
Sbjct: 121 LLIVCDPRID-HQPVTEASYVNIPVI--AFCNT-DSPLRHVDVAIPC 163
>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 33.9 bits (74), Expect = 0.15
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 1/110 (0%)
Frame = -2
Query: 625 EEQINHNIPALVTGK-HTTKPQHFTCQQPPHXTNRVGRLGLHGIAMSTNLSGESDVAQSN 449
EE ++ + +L+ K + + +H +C + + G+ G + + V SN
Sbjct: 822 EEFSDYTVRSLLLSKCRSWQNRHISCDRRDASSGE-GKEGCGHLQLRVCNRRRHTVYNSN 880
Query: 448 HRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRST 299
+V + N + CR Q NQ T FT + ++ C+T RN RS+
Sbjct: 881 KGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMRSS 930
>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
Length = 315
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 503 MQTKSSHSIGXMWWLLAREVLRLRGVLP 586
M+ H G +WW+L E LR + VLP
Sbjct: 40 MRGPDIHDDGSVWWVLTSESLRAKAVLP 67
>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 4833
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/72 (27%), Positives = 37/72 (51%)
Frame = -2
Query: 241 NTSAGFSMATTARAXRTSFSQVRRKLITWVPSARRL*T*VSIWKLTFSAPRWVVAASILV 62
N++ G ++TTAR R + +Q+ +L T PS + + V + + + PR+ L
Sbjct: 75 NSNTGV-ISTTARIDRETTTQISLQLRTLNPSNQPISVQVQVDDINDNEPRFPTLYYTLR 133
Query: 61 TSSSLRASTSNP 26
S+ +T+NP
Sbjct: 134 IRESMDVNTTNP 145
>SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)
Length = 225
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -2
Query: 463 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRR 305
V SN +V + N + CR Q NQ T FT + ++ C+T RN R
Sbjct: 155 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 207
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +1
Query: 241 SSSHQALRSACCTEVCXAHRCYAYCGTFHTRC---FY*PDPSCIP*TSSLD 384
S +HQ + +A CT + +RC G F C P PS P +S D
Sbjct: 2911 SGTHQCMHNATCTNLEGGYRCTCVEGYFGEHCENGTLAPPPSSAPRQASND 2961
>SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)
Length = 280
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -2
Query: 463 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRR 305
V SN +V + N + CR Q NQ T FT + ++ C+T RN R
Sbjct: 196 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 248
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,705,778
Number of Sequences: 59808
Number of extensions: 600899
Number of successful extensions: 1596
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1590
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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