Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0412
(773 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 176 1e-44
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 170 1e-42
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 144 6e-35
At2g22340.1 68415.m02651 hypothetical protein 33 0.28
At2g07020.1 68415.m00803 protein kinase family protein contains ... 30 2.0
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP... 28 6.0
At4g34890.1 68417.m04948 xanthine dehydrogenase, putative simila... 28 7.9
At4g07990.1 68417.m01280 DNAJ heat shock N-terminal domain-conta... 28 7.9
At2g31920.1 68415.m03899 expressed protein 28 7.9
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 176 bits (429), Expect = 1e-44
Identities = 82/143 (57%), Positives = 103/143 (72%), Gaps = 1/143 (0%)
Frame = +2
Query: 254 RPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASY 433
RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP DHQPI E +
Sbjct: 84 RPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGAL 143
Query: 434 VNIPVIALCNIRLPTKICGHCYPMQTKSSHSIGXMWWLLAREVLRLRGVLPRDQRWDVVV 613
NIP+IA C+ P + P K HSIG ++WLLAR VL++RG + Q+WDV+V
Sbjct: 144 GNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMV 203
Query: 614 DLFFYRDPEESE-KDEQQAKEQA 679
DLFFYR+PEE++ +DE +A QA
Sbjct: 204 DLFFYREPEETKPEDEDEAGPQA 226
Score = 93.1 bits (221), Expect = 2e-19
Identities = 58/156 (37%), Positives = 80/156 (51%), Gaps = 1/156 (0%)
Frame = +3
Query: 39 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLXARAVVA 218
L+ E DV M AA HLG +N N+QME YV+KRR DG ++ NL +TWEKL + AR +VA
Sbjct: 12 LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71
Query: 219 IENPADVFVISSGPSVSVLY*SLXRTPVLRLLRDVSHQVLLLTRSKLHSVNLVS*LYWTL 398
IENP D+ V S+ P + + H T S + L T
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGANAIAG-RHTPGTFTNQMQTSFSEPRLLILTD 130
Query: 399 HKTIN-PLLKLHMSTFL*LLCATSDSPLRFVDIAIP 503
+T + P+ + + + +DSP+RFVDI IP
Sbjct: 131 PRTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIP 166
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 170 bits (413), Expect = 1e-42
Identities = 80/152 (52%), Positives = 105/152 (69%), Gaps = 1/152 (0%)
Frame = +2
Query: 227 PR*CVRHLIRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 406
P+ + RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 76 PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135
Query: 407 HQPITEASYVNIPVIALCNIRLPTKICGHCYPMQTKSSHSIGXMWWLLAREVLRLRGVLP 586
HQPI E + NIP IA C+ P P K HSIG ++WLLAR VL++RG +
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIL 195
Query: 587 RDQRWDVVVDLFFYRDPEESEKD-EQQAKEQA 679
Q+WDV+VDLFFYR+PEE++++ +++A+ QA
Sbjct: 196 AAQKWDVMVDLFFYREPEEAKQEGDEEAEVQA 227
Score = 90.6 bits (215), Expect = 1e-18
Identities = 39/70 (55%), Positives = 52/70 (74%)
Frame = +3
Query: 51 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLXARAVVAIENP 230
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL + AR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 231 ADVFVISSGP 260
D+ V S+ P
Sbjct: 77 KDIIVQSARP 86
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 144 bits (349), Expect = 6e-35
Identities = 68/130 (52%), Positives = 85/130 (65%)
Frame = +2
Query: 227 PR*CVRHLIRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 406
P+ + RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 76 PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135
Query: 407 HQPITEASYVNIPVIALCNIRLPTKICGHCYPMQTKSSHSIGXMWWLLAREVLRLRGVLP 586
HQPI E + NIP IA C+ P P K HSIG ++WLLAR VL++RG +
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIL 195
Query: 587 RDQRWDVVVD 616
Q+WDV+V+
Sbjct: 196 AAQKWDVMVN 205
Score = 90.6 bits (215), Expect = 1e-18
Identities = 39/70 (55%), Positives = 52/70 (74%)
Frame = +3
Query: 51 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLXARAVVAIENP 230
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL + AR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 231 ADVFVISSGP 260
D+ V S+ P
Sbjct: 77 KDIIVQSARP 86
>At2g22340.1 68415.m02651 hypothetical protein
Length = 358
Score = 32.7 bits (71), Expect = 0.28
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 89 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 208
SW LP+GD +Q C WY + S +G+ + C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227
>At2g07020.1 68415.m00803 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 326 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 427
TP TNQ++ A E +LDP PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653
>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
identical to SP|Q9GCB9 Mitochondrial ribosomal protein
S2 {Arabidopsis thaliana}; contains Pfam profile
PF00318: ribosomal protein S2
Length = 219
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 371 PRLLIVLDPAQDHQPITEASYVNIPVIALCNIRLPTKICGH-CYPMQTKSS 520
P ++V D + I EAS + IPV+A+ + +P + YP+ + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181
>At4g34890.1 68417.m04948 xanthine dehydrogenase, putative similar
to xanthine dehydrogenase from Gallus gallus, PIR:XOCHDH
[SP|P47990]; contains Pfam profile PF02738 Aldehyde
oxidase and xanthine dehydrogenase, molybdopterin
binding domain
Length = 1361
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = -2
Query: 616 INHNIPALVTGKHTTKPQHFTCQQPPHXTNRVGRLGLHGIAMSTNLSGESDVAQSNHRNV 437
++HN+ + T P H + QP +R+G+ + T++ G S+V S V
Sbjct: 553 VSHNVNNANSAIETFPPSHMSAVQPVPRLSRIGKQDYETVKQGTSV-GSSEVHLSARMQV 611
>At4g07990.1 68417.m01280 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI5 DnaJ
homolog subfamily B member 10 Mus musculus ; contains
Pfam profile PF00226 DnaJ domain
Length = 347
Score = 27.9 bits (59), Expect = 7.9
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +2
Query: 215 SHREPR*CVRHLIRPFGQRAVLKFAAHTGATPIA-GRFTPGAFTN-QIQAAFREPRLLIV 388
SHR R H P QR V + H ++ R TP +T +I+ AFRE L
Sbjct: 261 SHRNQR--TNHQ-EPSDQRRVYPLSHHYSVLGLSRSRATP--YTEAEIKKAFREKALEFH 315
Query: 389 LDPAQDHQPITEASYVNI 442
D QD++ + EA + +
Sbjct: 316 PDQNQDNKIVAEAKFKEV 333
>At2g31920.1 68415.m03899 expressed protein
Length = 585
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 138 RRADGTHVINLRRTWEKLVLXARAVVAIENPADVFVISSGPSV 266
RR D +++ R KLVL ++++ IE+P+ F + P++
Sbjct: 173 RRRDAALLLSSPRLKSKLVLNDKSLLKIESPSKYFNCGTSPAL 215
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,492,011
Number of Sequences: 28952
Number of extensions: 410615
Number of successful extensions: 1035
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -