Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0411
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   1.4  
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    27   4.4  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    26   7.6  

>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 751 WTSSSPPGVKWVPEPIDIYNVNAATHL 831
           +++S PP +K    P+DI N++AA  L
Sbjct: 222 YSASQPPSIKTDASPVDIKNMDAAEKL 248


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 123 KYIKN-KKNITHYHVFDTHTLYFLCLLSNFYYCL 221
           K+IK+  K I  YH    HT+  L LL  F + L
Sbjct: 74  KFIKSLSKKIISYHFISFHTIVVLLLLPPFSHLL 107


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +3

Query: 417 DVRPRAMTPRVGSFIIA-LHCCRC 485
           ++ P+      G FI+  +HCCRC
Sbjct: 52  EMEPKTEQMSTGRFIVRHIHCCRC 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,427
Number of Sequences: 5004
Number of extensions: 56065
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)