Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0411
         (838 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0292 + 27581862-27581913,27582395-27582615,27582691-275830...    29   6.1  
12_02_0391 - 18533427-18533620,18534120-18534405,18534967-185350...    28   8.0  

>02_05_0292 +
           27581862-27581913,27582395-27582615,27582691-27583087,
           27583645-27583730,27584229-27584292,27584395-27584507,
           27584998-27585036,27585037-27585177
          Length = 370

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 748 GWTSSSPPGVKW-VPEPIDIYNVNAAT 825
           GW+ SSPP  KW   + +D+  V  AT
Sbjct: 178 GWSDSSPPKAKWDRAKNVDVLGVELAT 204


>12_02_0391 -
           18533427-18533620,18534120-18534405,18534967-18535028,
           18535526-18535613
          Length = 209

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = -1

Query: 586 WIIKNNKIMNLFKGHSVTTMIQKYLILCYIACRLHLQQCNAIINEPTRGVIALGR 422
           WI++N +    +  +  ++ + K ++LC +AC + L++ N       RG+  +GR
Sbjct: 98  WILQNQQDNGSWGINPSSSSVDKDILLCTLACVVALKRWNVGPYHIKRGLNFIGR 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,233,320
Number of Sequences: 37544
Number of extensions: 302689
Number of successful extensions: 615
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)