Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0410
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.9  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    26   5.0  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    26   6.7  
SPAC23C11.17 |||mitochondrial inner membrane protein involved in...    26   6.7  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    26   6.7  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    26   6.7  

>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 444 ALRCYLLTQILEVETHHTV 388
           A R Y+LTQ+ ++ TH TV
Sbjct: 107 ATRSYMLTQLFQINTHGTV 125


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
 Frame = +1

Query: 523 LSLGSYSLWETHGPDDERQLEPHEKAAPRATQLATRMIEKGDSYLSALLTMKPPS*D--- 693
           +S  S + ++   PD+ER L+PH     R  QL T   +  D   +AL  +   S D   
Sbjct: 250 ISASSNAFYKPAAPDNERPLDPHITPYLR-LQLLTTGADDNDIRKNALTQVDYLSYDWKE 308

Query: 694 -----PTRETKTSKXNYPRGEKKE 750
                  RE   +K NY  G + E
Sbjct: 309 TDIWASWREITKTKANYDNGIRLE 332


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 1/106 (0%)
 Frame = -1

Query: 525 QHTHVRRNFSISISMTSLTVASEATRXALRCY-LLTQILEVETHHTVELQILIGFAEREQ 349
           Q   V+R FS  ++     +  EA       Y    Q+L++ T    +  I+  + +RE 
Sbjct: 502 QRQQVQREFSTLLNQYKDEINREAAYNLANNYGKEEQLLQIATVMKDQSYIMHYWVQREN 561

Query: 348 IEPVGVPLVYHVAKRFTLQHTLVRWVHRVTA*VQFFNAGYSWLDVH 211
            E     L   V++   +QH      HR    V  +    + LDVH
Sbjct: 562 YEKALETLNEGVSQETLIQHATALLTHRPNETVSIWER-QTDLDVH 606


>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
           potassium ion transport|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 493 NREIPSDMRMLSLGSYSLWETHGPDDERQLEPHEKAAPRATQLAT 627
           N+  PSD+   ++GS  L+ T  P   +  E  ++ A   T+  T
Sbjct: 67  NKYSPSDIVFYNIGSSRLYSTETPTPSKVKEAPKQVAAEETKPTT 111


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -3

Query: 445 CTSLLSSDPDLGSRNAS-HRGT 383
           C SLLSSDPD  +R A  ++GT
Sbjct: 374 CISLLSSDPDKYARYAGLYKGT 395


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +1

Query: 538 YSLWETHGPDDERQLEPHEKAAPRATQLATRMI--EKGDSYLSALLTMK 678
           + +W+ H P    +    +K  P  + L++ ++  +  +SYL   +T+K
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSELVAAKLKNSYLMDGMTLK 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,957
Number of Sequences: 5004
Number of extensions: 54955
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)