Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0410
(756 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein. 99 2e-21
AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical ... 99 2e-21
AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical ... 99 2e-21
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ... 99 2e-21
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ... 99 2e-21
U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical pr... 31 0.67
Z70286-3|CAA94296.1| 298|Caenorhabditis elegans Hypothetical pr... 31 0.88
U00065-2|AAL27237.1| 672|Caenorhabditis elegans Prion-like-(q/n... 30 1.5
AC024809-6|AAF59545.1| 213|Caenorhabditis elegans Ral (ras-rela... 29 3.6
Z70285-1|CAA94288.2| 243|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z49131-1|CAA88974.1| 122|Caenorhabditis elegans Hypothetical pr... 28 8.2
U88178-6|ABA03112.1| 312|Caenorhabditis elegans Hypothetical pr... 28 8.2
>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
Length = 1666
Score = 99 bits (238), Expect = 2e-21
Identities = 58/154 (37%), Positives = 77/154 (50%)
Frame = +1
Query: 295 EREALRNMIHQWNANRLDLFALSEPNENLEFHGVMRFYFQDLGQKIATKCXPXXXXXXXX 474
ERE L ++ QWN NRLDLF LS P E+LE GVMRFYFQD G+K+ TKC
Sbjct: 6 EREQLACLVQQWNENRLDLFHLSYPTEDLEVEGVMRFYFQDGGEKVLTKCVRVSSTATTR 65
Query: 475 XXXXDTNREIPSDMRMLSLGSYSLWETHGPDDERQLEPHEKAAPRATQLATRMIEKGDSY 654
+ + D++MLS +YSLWE H +ER+L EK P QL ++ +
Sbjct: 66 AVVDALSEKFLPDLKMLSNDTYSLWEVHENGEERKLLDEEK--PLVVQLQWHKDDREGRF 123
Query: 655 LSALLTMKPPS*DPTRETKTSKXNYPRGEKKELK 756
L P S +E + + + KE K
Sbjct: 124 LLKKDAAPPVSLLNLQEADQKNTRFAKKKDKEPK 157
>AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical
protein W03F11.6e protein.
Length = 1039
Score = 99 bits (238), Expect = 2e-21
Identities = 58/154 (37%), Positives = 77/154 (50%)
Frame = +1
Query: 295 EREALRNMIHQWNANRLDLFALSEPNENLEFHGVMRFYFQDLGQKIATKCXPXXXXXXXX 474
ERE L ++ QWN NRLDLF LS P E+LE GVMRFYFQD G+K+ TKC
Sbjct: 4 EREQLACLVQQWNENRLDLFHLSYPTEDLEVEGVMRFYFQDGGEKVLTKCVRVSSTATTR 63
Query: 475 XXXXDTNREIPSDMRMLSLGSYSLWETHGPDDERQLEPHEKAAPRATQLATRMIEKGDSY 654
+ + D++MLS +YSLWE H +ER+L EK P QL ++ +
Sbjct: 64 AVVDALSEKFLPDLKMLSNDTYSLWEVHENGEERKLLDEEK--PLVVQLQWHKDDREGRF 121
Query: 655 LSALLTMKPPS*DPTRETKTSKXNYPRGEKKELK 756
L P S +E + + + KE K
Sbjct: 122 LLKKDAAPPVSLLNLQEADQKNTRFAKKKDKEPK 155
>AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical
protein W03F11.6d protein.
Length = 1184
Score = 99 bits (238), Expect = 2e-21
Identities = 58/154 (37%), Positives = 77/154 (50%)
Frame = +1
Query: 295 EREALRNMIHQWNANRLDLFALSEPNENLEFHGVMRFYFQDLGQKIATKCXPXXXXXXXX 474
ERE L ++ QWN NRLDLF LS P E+LE GVMRFYFQD G+K+ TKC
Sbjct: 4 EREQLACLVQQWNENRLDLFHLSYPTEDLEVEGVMRFYFQDGGEKVLTKCVRVSSTATTR 63
Query: 475 XXXXDTNREIPSDMRMLSLGSYSLWETHGPDDERQLEPHEKAAPRATQLATRMIEKGDSY 654
+ + D++MLS +YSLWE H +ER+L EK P QL ++ +
Sbjct: 64 AVVDALSEKFLPDLKMLSNDTYSLWEVHENGEERKLLDEEK--PLVVQLQWHKDDREGRF 121
Query: 655 LSALLTMKPPS*DPTRETKTSKXNYPRGEKKELK 756
L P S +E + + + KE K
Sbjct: 122 LLKKDAAPPVSLLNLQEADQKNTRFAKKKDKEPK 155
>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
protein W03F11.6c protein.
Length = 1419
Score = 99 bits (238), Expect = 2e-21
Identities = 58/154 (37%), Positives = 77/154 (50%)
Frame = +1
Query: 295 EREALRNMIHQWNANRLDLFALSEPNENLEFHGVMRFYFQDLGQKIATKCXPXXXXXXXX 474
ERE L ++ QWN NRLDLF LS P E+LE GVMRFYFQD G+K+ TKC
Sbjct: 4 EREQLACLVQQWNENRLDLFHLSYPTEDLEVEGVMRFYFQDGGEKVLTKCVRVSSTATTR 63
Query: 475 XXXXDTNREIPSDMRMLSLGSYSLWETHGPDDERQLEPHEKAAPRATQLATRMIEKGDSY 654
+ + D++MLS +YSLWE H +ER+L EK P QL ++ +
Sbjct: 64 AVVDALSEKFLPDLKMLSNDTYSLWEVHENGEERKLLDEEK--PLVVQLQWHKDDREGRF 121
Query: 655 LSALLTMKPPS*DPTRETKTSKXNYPRGEKKELK 756
L P S +E + + + KE K
Sbjct: 122 LLKKDAAPPVSLLNLQEADQKNTRFAKKKDKEPK 155
>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
protein W03F11.6a protein.
Length = 1658
Score = 99 bits (238), Expect = 2e-21
Identities = 58/154 (37%), Positives = 77/154 (50%)
Frame = +1
Query: 295 EREALRNMIHQWNANRLDLFALSEPNENLEFHGVMRFYFQDLGQKIATKCXPXXXXXXXX 474
ERE L ++ QWN NRLDLF LS P E+LE GVMRFYFQD G+K+ TKC
Sbjct: 4 EREQLACLVQQWNENRLDLFHLSYPTEDLEVEGVMRFYFQDGGEKVLTKCVRVSSTATTR 63
Query: 475 XXXXDTNREIPSDMRMLSLGSYSLWETHGPDDERQLEPHEKAAPRATQLATRMIEKGDSY 654
+ + D++MLS +YSLWE H +ER+L EK P QL ++ +
Sbjct: 64 AVVDALSEKFLPDLKMLSNDTYSLWEVHENGEERKLLDEEK--PLVVQLQWHKDDREGRF 121
Query: 655 LSALLTMKPPS*DPTRETKTSKXNYPRGEKKELK 756
L P S +E + + + KE K
Sbjct: 122 LLKKDAAPPVSLLNLQEADQKNTRFAKKKDKEPK 155
>U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical
protein D1044.7 protein.
Length = 400
Score = 31.5 bits (68), Expect = 0.67
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 518 VCCHSARTRCGRPTAPTTSAS 580
+CCHS T+CG ++P SAS
Sbjct: 67 LCCHSQNTQCGTNSSPQVSAS 87
>Z70286-3|CAA94296.1| 298|Caenorhabditis elegans Hypothetical
protein K08C7.7 protein.
Length = 298
Score = 31.1 bits (67), Expect = 0.88
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = +1
Query: 163 CY*IVWRRFLLHSRLSMDI*PRISCIKKLD--LCGDTMDPADKRMLEREALRNMIHQWNA 336
C I +R F S+ ++ ++ + KLD +CG ++ A K+ML E LR + H ++A
Sbjct: 73 CDRIPFRSFDYISKFFCNVNVKVLTVNKLDEEICGFLIEKAQKKMLRFEQLR-LFHSFSA 131
Query: 337 NRLDLFALSEPNE 375
+ + L + ++
Sbjct: 132 SHESICQLLQASK 144
>U00065-2|AAL27237.1| 672|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 25
protein.
Length = 672
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 518 VCCHSARTRCGRPTAPTTSAS 580
+CC+S T+CG ++P SAS
Sbjct: 100 ICCYSTNTQCGSNSSPQVSAS 120
>AC024809-6|AAF59545.1| 213|Caenorhabditis elegans Ral (ras-related
gtpase) homologprotein 1 protein.
Length = 213
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 253 LCGDTMDPADKRMLEREALRNMIHQWNANRLDLFALSEPNENLEFHGVMR 402
L G+ D D+R++ E R QW + ++ A N + F+ +MR
Sbjct: 128 LVGNKGDMRDQRVVSAELCRQRAEQWGCHYVETSAKRRENVDKVFYDLMR 177
>Z70285-1|CAA94288.2| 243|Caenorhabditis elegans Hypothetical
protein F56C4.1 protein.
Length = 243
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -3
Query: 373 HWV-R*ARTDRAGWRSIGVSCCEALHAPTYACP 278
HWV R D WR++ + C + TY CP
Sbjct: 123 HWVVRKDEDDLESWRNVKIDECSTTNDVTYHCP 155
>Z49131-1|CAA88974.1| 122|Caenorhabditis elegans Hypothetical
protein ZC373.2 protein.
Length = 122
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +2
Query: 461 DATVSDVIEILIEKFRRTCVCCHSARTR-CG 550
D +D I RRTCVCC + R CG
Sbjct: 64 DGLTTDFASGFISNDRRTCVCCFNNTNRNCG 94
>U88178-6|ABA03112.1| 312|Caenorhabditis elegans Hypothetical
protein W09C3.8 protein.
Length = 312
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 385 TPDSHWVR*ARTDRAGWRSIGVSC 314
TP + W+ ARTDR W+ SC
Sbjct: 286 TPKAPWLSNARTDREKWKEFVRSC 309
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,840,927
Number of Sequences: 27780
Number of extensions: 315573
Number of successful extensions: 915
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -