Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0410
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    26   0.44 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   4.1  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   5.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.4  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -3

Query: 211 LTAVSVAKIYAILSSNIFKCKHNHFFT*SNNKNTRTITSKTFL*YKTFNYKYFREPVN 38
           L  +S  KI   +SSNI++ ++N +    +NK  +       L +   N++    PVN
Sbjct: 348 LQFISGIKIIKQISSNIYERQNNEYIWIVSNKYQKIANGD--LNFNEVNFRILNAPVN 403


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 221 SHEYPALKNWTYAVTRWTQRTSV 289
           S E+   KN+ + V RW  +T V
Sbjct: 62  SGEFDHTKNYPFDVDRWRDKTFV 84


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 645 RFLLKCLTNNEASVIGSDKGDQNFKXKL 728
           R ++  L+NN  S I +   D N+  KL
Sbjct: 79  RKIISSLSNNYISNISNYNNDNNYNKKL 106


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 328 IGVSCCEALHAPTYACPLG 272
           IGV    A   PTY C LG
Sbjct: 644 IGVLTLVATSMPTYICYLG 662


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,076
Number of Sequences: 438
Number of extensions: 3384
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)