Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0410
         (756 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33420.1 68414.m04137 PHD finger family protein contains Pfam...    31   0.83 
At1g06780.1 68414.m00721 glycosyl transferase family 8 protein c...    29   3.3  

>At1g33420.1 68414.m04137 PHD finger family protein contains Pfam
           profile: PF00628: PHD-finger
          Length = 697

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +2

Query: 161 DVTR*YGVDFCYTH----GCQWTSSHEYPALKNWTYAVTRWTQRTSV 289
           DV+R YG+D+   H    GC W S   Y   K+ +YA+T+   +++V
Sbjct: 230 DVSRKYGMDYRLLHGITRGCSWYSEWGY-EFKSGSYALTKEAYQSAV 275


>At1g06780.1 68414.m00721 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 589

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +1

Query: 571 ERQLEPHEKAAPRATQLATRMIEKGDSYLSALLTMKPPS*DPTRETKTSKXNY 729
           E Q++  +  A    QLA R   KG   LS  LT +  S DP +    ++ NY
Sbjct: 242 EEQVQAQKNQAAYLMQLAARTTPKGLHCLSMRLTSEYFSLDPEKRQMPNQQNY 294


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,869,773
Number of Sequences: 28952
Number of extensions: 286595
Number of successful extensions: 738
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)