Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0409
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...   140   2e-34
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    30   0.36 
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    27   4.5  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   5.9  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    26   7.8  
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|...    26   7.8  

>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score =  140 bits (339), Expect = 2e-34
 Identities = 62/85 (72%), Positives = 75/85 (88%)
 Frame = +2

Query: 254 NKPGCEVDDLRGGVAGGSILQGVLTVGMEIEVRPGLVSKDADGKLTCRPIFSRIVSLFAE 433
           NKPG EVDDL+GGVAGGSIL GVL +  EIE+RPG+V+KD DG++ C+PIFSRI+SLFAE
Sbjct: 245 NKPGAEVDDLKGGVAGGSILTGVLRLNDEIEIRPGIVTKDDDGRIRCQPIFSRIISLFAE 304

Query: 434 QNELQYAVPGGLIGVGTKIEPTLCR 508
            N+L+ AVPGGLIGVGT ++PTLCR
Sbjct: 305 HNDLKIAVPGGLIGVGTTVDPTLCR 329



 Score =  131 bits (317), Expect = 1e-31
 Identities = 56/84 (66%), Positives = 75/84 (89%)
 Frame = +3

Query: 3   KLKHILILQNKIDLVKEGQAKEQHEQIVKFVQGTVAEGAPIIPISAQLKYNIEVLCEYIT 182
           +LKHI+ILQNK+DL++E  A+E ++ I+KF++GTVAE +PI+PISAQLKYNI+ + EYI 
Sbjct: 161 QLKHIIILQNKVDLIRESAAEEHYQSILKFIKGTVAENSPIVPISAQLKYNIDAILEYIV 220

Query: 183 KKIPVPLRDFTSPPRMIVIRSFDV 254
           KKIP+P+RDFT+ PR+IVIRSFDV
Sbjct: 221 KKIPIPVRDFTTAPRLIVIRSFDV 244



 Score =  115 bits (277), Expect = 7e-27
 Identities = 61/101 (60%), Positives = 75/101 (74%)
 Frame = +1

Query: 508 SDRLVGQVLGAVGCLPGIFVKLEVSYYLLKRLLGVRTEGDKKAAKVQKLVKNEVLLVNIG 687
           +DRLVGQVLG+ G LP ++ +LE++Y+LL+RLLGV++ GDK   KVQKL KNEVL+VNIG
Sbjct: 330 ADRLVGQVLGSKGNLPEVYTELEINYFLLRRLLGVKS-GDKNTTKVQKLAKNEVLMVNIG 388

Query: 688 SLSTGGRVIATKVDFG*KSPFTNPCCTGIGEKS*HWSRRVE 810
           S STGGRV+  K D   K   T P CT IGEK    SRR+E
Sbjct: 389 STSTGGRVMMVKADMA-KILLTAPACTEIGEKV-ALSRRIE 427


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = -3

Query: 698 VLNDPIFTRRTSFLTNFWTLAAFLSPSVRTPSKRFKR**DTSSLTKIPG 552
           V++    TRR + L++FWTL   L  ++  P  +FKR    SS  +IPG
Sbjct: 294 VVSTKKITRRKNTLSDFWTLLHSLPSTLLWP--QFKRKYRKSSTLQIPG 340


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = -2

Query: 483  VPTPIRPPGTAYCSSFCSANSETMRENMGRQVNLPSASLLTKPGRTSIS 337
            +P P +  G            + + E +G Q+NLP   +L K    S++
Sbjct: 1090 IPNPKKQSGNTSADQVLFNQPKQVTEKLGVQLNLPKTKILEKVSSHSLA 1138


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
            Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 509  LIDLWDKY*EQLDVYREFLSNSKYLIIF*NVCLACALKEIKR 634
            LIDLW  +     V    ++N+K+L ++  + LA +L +  R
Sbjct: 913  LIDLWVAFWTNSSVNSPDVNNNKFLFVYGTMLLAYSLLDFLR 954


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -1

Query: 82  ICSCCSLACPS 50
           +C+CCS +CPS
Sbjct: 167 LCACCSTSCPS 177


>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 762 LHGNWRKKLALE*KSRKSTGGLIGWGTKF 848
           L   WRKKL     +RK+  G+  WG K+
Sbjct: 118 LQEKWRKKLMKSIANRKAK-GISNWGKKY 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,777,605
Number of Sequences: 5004
Number of extensions: 83894
Number of successful extensions: 232
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)