Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0409
(853 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0491 - 3884764-3885114,3885143-3885403,3885493-3885711,388... 144 1e-34
12_02_1049 + 25681284-25681349,25684409-25684627,25684720-256849... 135 4e-32
05_07_0147 - 28022018-28022104,28022207-28022287,28022513-280226... 37 0.023
06_01_0038 + 375893-376093,376758-376883,376978-377177,377411-37... 31 1.5
01_07_0044 - 40701286-40701408,40701642-40701758,40702406-407024... 29 4.7
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 29 4.7
10_06_0004 - 9407954-9408007,9408219-9408386,9408441-9408542,940... 29 6.2
07_02_0020 - 11897013-11897168,11897521-11897637,11898141-118981... 29 6.2
03_06_0691 + 35576319-35576702,35576803-35576885,35576972-355770... 29 6.2
09_04_0074 - 14336430-14338268 28 8.2
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199... 28 8.2
>12_01_0491 -
3884764-3885114,3885143-3885403,3885493-3885711,
3885792-3886019,3886378-3886480,3886703-3886815,
3887262-3887323,3887915-3888104
Length = 508
Score = 144 bits (348), Expect = 1e-34
Identities = 63/84 (75%), Positives = 76/84 (90%)
Frame = +3
Query: 3 KLKHILILQNKIDLVKEGQAKEQHEQIVKFVQGTVAEGAPIIPISAQLKYNIEVLCEYIT 182
+L+HI+ILQNKIDL++EG A QHE I KF+QGT+AEGAP++PISAQLKYNI+V+CEYI
Sbjct: 201 RLQHIIILQNKIDLIQEGAAMNQHEAIQKFIQGTIAEGAPVVPISAQLKYNIDVICEYIV 260
Query: 183 KKIPVPLRDFTSPPRMIVIRSFDV 254
KKIP+P R+FTSPP MIVIRSFDV
Sbjct: 261 KKIPIPERNFTSPPNMIVIRSFDV 284
Score = 135 bits (327), Expect = 4e-32
Identities = 62/85 (72%), Positives = 72/85 (84%)
Frame = +2
Query: 254 NKPGCEVDDLRGGVAGGSILQGVLTVGMEIEVRPGLVSKDADGKLTCRPIFSRIVSLFAE 433
NKPG EVD++RGGVAGGSIL+GVL V IEVRPG+V KD G + C PI+SRIVSL+AE
Sbjct: 285 NKPGSEVDEIRGGVAGGSILRGVLRVNQNIEVRPGIVMKDESGNIKCTPIYSRIVSLYAE 344
Query: 434 QNELQYAVPGGLIGVGTKIEPTLCR 508
QNELQ+AVPGGLIGVGT ++PTL R
Sbjct: 345 QNELQFAVPGGLIGVGTTMDPTLTR 369
Score = 101 bits (243), Expect = 6e-22
Identities = 60/117 (51%), Positives = 76/117 (64%), Gaps = 16/117 (13%)
Frame = +1
Query: 508 SDRLVGQVLGAVGCLPGIFVKLE----------------VSYYLLKRLLGVRTEGDKKAA 639
+DRLVGQVLG VG LP ++V+LE ++++LL+RLLGVRT+G +KA
Sbjct: 370 ADRLVGQVLGEVGSLPDVYVELEGFSERMSLLTSEPFTQINFFLLRRLLGVRTKGTEKAG 429
Query: 640 KVQKLVKNEVLLVNIGSLSTGGRVIATKVDFG*KSPFTNPCCTGIGEKS*HWSRRVE 810
KV KL K E+L++NIGS+STG RV+A K D K T P CT GEK SRRVE
Sbjct: 430 KVSKLTKGEILMLNIGSMSTGARVVAVKNDLA-KLQLTAPVCTSKGEKV-ALSRRVE 484
>12_02_1049 +
25681284-25681349,25684409-25684627,25684720-25684980,
25685060-25685362
Length = 282
Score = 135 bits (327), Expect = 4e-32
Identities = 62/85 (72%), Positives = 72/85 (84%)
Frame = +2
Query: 254 NKPGCEVDDLRGGVAGGSILQGVLTVGMEIEVRPGLVSKDADGKLTCRPIFSRIVSLFAE 433
NKPG EVD++RGGVAGGSIL+GVL V IEVRPG+V KD G + C PI+SRIVSL+AE
Sbjct: 75 NKPGSEVDEIRGGVAGGSILRGVLRVNQNIEVRPGIVMKDESGNIKCTPIYSRIVSLYAE 134
Query: 434 QNELQYAVPGGLIGVGTKIEPTLCR 508
QNELQ+AVPGGLIGVGT ++PTL R
Sbjct: 135 QNELQFAVPGGLIGVGTTMDPTLTR 159
Score = 118 bits (284), Expect = 6e-27
Identities = 60/101 (59%), Positives = 76/101 (75%)
Frame = +1
Query: 508 SDRLVGQVLGAVGCLPGIFVKLEVSYYLLKRLLGVRTEGDKKAAKVQKLVKNEVLLVNIG 687
+DRLVGQVLG VG LP ++V+LE++++LL+RLLGVRT+G +KA KV KL K E+L++NIG
Sbjct: 160 ADRLVGQVLGEVGSLPDVYVELEINFFLLRRLLGVRTKGTEKAGKVSKLTKGEILMLNIG 219
Query: 688 SLSTGGRVIATKVDFG*KSPFTNPCCTGIGEKS*HWSRRVE 810
S+STG RV+A K D K T P CT GEK SRRVE
Sbjct: 220 SMSTGARVVAVKNDLA-KLQLTAPVCTSKGEKV-ALSRRVE 258
Score = 99.1 bits (236), Expect = 4e-21
Identities = 42/53 (79%), Positives = 50/53 (94%)
Frame = +3
Query: 96 QGTVAEGAPIIPISAQLKYNIEVLCEYITKKIPVPLRDFTSPPRMIVIRSFDV 254
+GT+AEGAP++PISAQLKYNI+V+CEYI KKIP+P R+FTSPP MIVIRSFDV
Sbjct: 22 EGTIAEGAPVVPISAQLKYNIDVICEYIVKKIPIPERNFTSPPNMIVIRSFDV 74
>05_07_0147 -
28022018-28022104,28022207-28022287,28022513-28022614,
28022701-28022799,28023060-28023185,28023272-28023385,
28023478-28023618,28023717-28023862,28024011-28024386
Length = 423
Score = 36.7 bits (81), Expect = 0.023
Identities = 19/61 (31%), Positives = 35/61 (57%)
Frame = +3
Query: 15 ILILQNKIDLVKEGQAKEQHEQIVKFVQGTVAEGAPIIPISAQLKYNIEVLCEYITKKIP 194
+L++ NK DL+K G+ ++ E KF +IPISA+ + ++ + E+I K+P
Sbjct: 239 VLLVLNKKDLIKPGEIAKKLEWYQKFTNAD-----DVIPISAKFGHGVDDIKEWILSKLP 293
Query: 195 V 197
+
Sbjct: 294 L 294
>06_01_0038 +
375893-376093,376758-376883,376978-377177,377411-377502,
377966-378222,378610-378846,378986-379063,380422-380571,
380646-380720,381109-381205,381289-381341
Length = 521
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +1
Query: 454 RPWWSYWRRNEDRTNAVPSDR-LVGQVLGAVGCLPG 558
R W+ WR + D +V + LGA GCLPG
Sbjct: 394 RFWFDLWRSRSSLKDVEGFDHSVVNETLGACGCLPG 429
>01_07_0044 -
40701286-40701408,40701642-40701758,40702406-40702498,
40702598-40702717,40702932-40703048,40703202-40703297,
40703395-40703544,40703916-40704070,40704156-40704196,
40704275-40704357,40704827-40705264
Length = 510
Score = 29.1 bits (62), Expect = 4.7
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +2
Query: 299 GGSILQGVLTVGMEIEVRPGLVSKDADGKLTCRP-IFSRIVSL----FAEQNELQY 451
GGS L T+G + +R V KD DG LTC P I+ ++ F E EL Y
Sbjct: 302 GGSDLTAT-TIGKALGLREIQVWKDVDGVLTCDPNIYPNATTVPYLTFEEAAELAY 356
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +3
Query: 45 VKEGQAKEQHEQIVKFVQGTVAEGAPIIPISAQLKYNIEVL 167
+ + +Q +Q+V+F++ E A I +SA+ ++NIE L
Sbjct: 1 MNDADVAKQIQQMVRFIRQEAEEKASEISVSAEEEFNIEKL 41
>10_06_0004 -
9407954-9408007,9408219-9408386,9408441-9408542,
9408710-9408934,9409889-9410047,9411768-9411900,
9412827-9413758,9413842-9413987,9415863-9416082
Length = 712
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = +2
Query: 170 RVYNKKDSRTPKGFHIASSYDCYSFIRCNKPGCEVDDLRG 289
R+ + +D P + + Y I C++PG ++ +L+G
Sbjct: 383 RILSFRDDEDPSLVELLFQFGRYLLISCSRPGTQISNLQG 422
>07_02_0020 -
11897013-11897168,11897521-11897637,11898141-11898197,
11898278-11898370,11898452-11898571,11898774-11898890,
11899254-11899349,11899445-11899594,11899932-11900086,
11901047-11901257
Length = 423
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +2
Query: 299 GGSILQGVLTVGMEIEVRPGLVSKDADGKLTCRP 400
GGS L T+G + +R V KD DG LTC P
Sbjct: 185 GGSDLTAT-TIGKALGLREIQVWKDVDGVLTCDP 217
>03_06_0691 +
35576319-35576702,35576803-35576885,35576972-35577012,
35577974-35578018,35578217-35578371,35579116-35579265,
35579386-35579481,35579738-35579854,35579969-35580088,
35580170-35580262,35580351-35580467,35580815-35580931,
35581089-35581151,35581238-35581399
Length = 580
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +2
Query: 299 GGSILQGVLTVGMEIEVRPGLVSKDADGKLTCRP 400
GGS L T+G + +R V KD DG LTC P
Sbjct: 299 GGSDLTAT-TIGKALGLREIQVWKDVDGVLTCDP 331
>09_04_0074 - 14336430-14338268
Length = 612
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +3
Query: 36 IDLVKEGQAKEQHEQIVKFVQGTVAEGAPIIPISAQLKYNIEVLCEYITKKI 191
+DL+ EQ E +++ +QG V+E I +SA N L E++ KK+
Sbjct: 463 MDLLGRAGLLEQSENLIENLQGKVSEALWGILMSASQTQNNIKLGEFVGKKL 514
>03_06_0353 - 33317015-33318235,33318567-33318824,33319587-33319904,
33319949-33320011,33320103-33320496,33320684-33320796,
33320932-33321639,33321667-33323199,33323395-33323607,
33323718-33324700,33324890-33325423,33325694-33325820,
33326083-33326162,33327347-33327377,33327949-33328053,
33328119-33328124,33328349-33328985,33329144-33329478,
33330394-33331113
Length = 2792
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/47 (31%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = -1
Query: 625 LLQCARQANVSKDNKILRV*QKFPVNIQLLL-ILVPQVYQTAQRWFD 488
+L+ +++AN + IL+ K +N + L +++PQ YQT +R+F+
Sbjct: 2735 VLKDSKKANDKSNVLILKNPYKLCLNKSVYLALIIPQQYQTKRRYFE 2781
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,552,864
Number of Sequences: 37544
Number of extensions: 550307
Number of successful extensions: 1389
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1389
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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