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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0409
         (853 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)             159   2e-39
SB_42880| Best HMM Match : Laminin_II (HMM E-Value=2.1)                31   1.6  
SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  

>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score =  159 bits (387), Expect = 2e-39
 Identities = 70/85 (82%), Positives = 81/85 (95%)
 Frame = +2

Query: 254 NKPGCEVDDLRGGVAGGSILQGVLTVGMEIEVRPGLVSKDADGKLTCRPIFSRIVSLFAE 433
           NKPGCEVDDL+GGVAGGSIL+GVL +G EIEVRPG+VSKD++GKL CRPI+SRI+SLFAE
Sbjct: 201 NKPGCEVDDLKGGVAGGSILKGVLKIGQEIEVRPGIVSKDSEGKLQCRPIYSRIISLFAE 260

Query: 434 QNELQYAVPGGLIGVGTKIEPTLCR 508
           QN+LQYA PGGLIGVGT+I+PTLCR
Sbjct: 261 QNDLQYAAPGGLIGVGTRIDPTLCR 285



 Score =  156 bits (378), Expect = 2e-38
 Identities = 72/84 (85%), Positives = 81/84 (96%)
 Frame = +3

Query: 3   KLKHILILQNKIDLVKEGQAKEQHEQIVKFVQGTVAEGAPIIPISAQLKYNIEVLCEYIT 182
           KLKHILILQNKIDLVKE QAK+Q++QI+KFVQGT+AEGAP+IPISAQLKYNIEV+CEYI 
Sbjct: 117 KLKHILILQNKIDLVKESQAKDQYDQILKFVQGTIAEGAPVIPISAQLKYNIEVICEYIC 176

Query: 183 KKIPVPLRDFTSPPRMIVIRSFDV 254
           KKIPVP+RDFTS PR+IVIRSFDV
Sbjct: 177 KKIPVPVRDFTSQPRLIVIRSFDV 200



 Score =  137 bits (332), Expect = 9e-33
 Identities = 71/101 (70%), Positives = 80/101 (79%)
 Frame = +1

Query: 508 SDRLVGQVLGAVGCLPGIFVKLEVSYYLLKRLLGVRTEGDKKAAKVQKLVKNEVLLVNIG 687
           +DR+VGQVLGAVG LP I+ +LE+SY+LL+RLLGVRTEGDKK AKV KL KNEVL+VNIG
Sbjct: 286 ADRMVGQVLGAVGALPEIYTELEISYFLLRRLLGVRTEGDKKGAKVSKLTKNEVLMVNIG 345

Query: 688 SLSTGGRVIATKVDFG*KSPFTNPCCTGIGEKS*HWSRRVE 810
           SLSTGGRV+A K D   K   T P CT IGEK    SRRVE
Sbjct: 346 SLSTGGRVLAVKADLA-KIVLTQPVCTEIGEKI-ALSRRVE 384


>SB_42880| Best HMM Match : Laminin_II (HMM E-Value=2.1)
          Length = 647

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
 Frame = +1

Query: 460 WWSYWRRNEDRTNAVPSDRLVG--QVLGAVGCLPGIFVKLEVS-YYLLKRLLGVRTEGDK 630
           WW Y  R+ +  + +PS+  V   ++  +  CL G   ++ ++   LL  +L VR    K
Sbjct: 487 WWLYLLRHYNGVSVIPSNITVANPELFASDACLTGCGAQIHINELELLTVVLAVRLWATK 546

Query: 631 -KAAKVQKLVKNEVLLVNIGSLSTGGRVI 714
            +   ++  V N   L  I + S+   V+
Sbjct: 547 LQGLTIELFVDNTTCLYAINNNSSASSVL 575


>SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1603

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 480 PTPIRPPGTAYCSSFCSANSETMRENMGRQ-VNLPSASLLTKPGRTSISIPTVRTP 316
           P P++PP     +SF   +     +N+G+Q +++ S+  +  P R   + P V  P
Sbjct: 90  PEPVKPPRPKRLNSFKRKDKAKKTDNVGKQDISIDSSDPVKPPRRKLPNPPPVEKP 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,017,348
Number of Sequences: 59808
Number of extensions: 614174
Number of successful extensions: 1315
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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