BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0409 (853 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 159 2e-39 SB_42880| Best HMM Match : Laminin_II (HMM E-Value=2.1) 31 1.6 SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6 >SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) Length = 541 Score = 159 bits (387), Expect = 2e-39 Identities = 70/85 (82%), Positives = 81/85 (95%) Frame = +2 Query: 254 NKPGCEVDDLRGGVAGGSILQGVLTVGMEIEVRPGLVSKDADGKLTCRPIFSRIVSLFAE 433 NKPGCEVDDL+GGVAGGSIL+GVL +G EIEVRPG+VSKD++GKL CRPI+SRI+SLFAE Sbjct: 201 NKPGCEVDDLKGGVAGGSILKGVLKIGQEIEVRPGIVSKDSEGKLQCRPIYSRIISLFAE 260 Query: 434 QNELQYAVPGGLIGVGTKIEPTLCR 508 QN+LQYA PGGLIGVGT+I+PTLCR Sbjct: 261 QNDLQYAAPGGLIGVGTRIDPTLCR 285 Score = 156 bits (378), Expect = 2e-38 Identities = 72/84 (85%), Positives = 81/84 (96%) Frame = +3 Query: 3 KLKHILILQNKIDLVKEGQAKEQHEQIVKFVQGTVAEGAPIIPISAQLKYNIEVLCEYIT 182 KLKHILILQNKIDLVKE QAK+Q++QI+KFVQGT+AEGAP+IPISAQLKYNIEV+CEYI Sbjct: 117 KLKHILILQNKIDLVKESQAKDQYDQILKFVQGTIAEGAPVIPISAQLKYNIEVICEYIC 176 Query: 183 KKIPVPLRDFTSPPRMIVIRSFDV 254 KKIPVP+RDFTS PR+IVIRSFDV Sbjct: 177 KKIPVPVRDFTSQPRLIVIRSFDV 200 Score = 137 bits (332), Expect = 9e-33 Identities = 71/101 (70%), Positives = 80/101 (79%) Frame = +1 Query: 508 SDRLVGQVLGAVGCLPGIFVKLEVSYYLLKRLLGVRTEGDKKAAKVQKLVKNEVLLVNIG 687 +DR+VGQVLGAVG LP I+ +LE+SY+LL+RLLGVRTEGDKK AKV KL KNEVL+VNIG Sbjct: 286 ADRMVGQVLGAVGALPEIYTELEISYFLLRRLLGVRTEGDKKGAKVSKLTKNEVLMVNIG 345 Query: 688 SLSTGGRVIATKVDFG*KSPFTNPCCTGIGEKS*HWSRRVE 810 SLSTGGRV+A K D K T P CT IGEK SRRVE Sbjct: 346 SLSTGGRVLAVKADLA-KIVLTQPVCTEIGEKI-ALSRRVE 384 >SB_42880| Best HMM Match : Laminin_II (HMM E-Value=2.1) Length = 647 Score = 30.7 bits (66), Expect = 1.6 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Frame = +1 Query: 460 WWSYWRRNEDRTNAVPSDRLVG--QVLGAVGCLPGIFVKLEVS-YYLLKRLLGVRTEGDK 630 WW Y R+ + + +PS+ V ++ + CL G ++ ++ LL +L VR K Sbjct: 487 WWLYLLRHYNGVSVIPSNITVANPELFASDACLTGCGAQIHINELELLTVVLAVRLWATK 546 Query: 631 -KAAKVQKLVKNEVLLVNIGSLSTGGRVI 714 + ++ V N L I + S+ V+ Sbjct: 547 LQGLTIELFVDNTTCLYAINNNSSASSVL 575 >SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1603 Score = 29.5 bits (63), Expect = 3.6 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Frame = -2 Query: 480 PTPIRPPGTAYCSSFCSANSETMRENMGRQ-VNLPSASLLTKPGRTSISIPTVRTP 316 P P++PP +SF + +N+G+Q +++ S+ + P R + P V P Sbjct: 90 PEPVKPPRPKRLNSFKRKDKAKKTDNVGKQDISIDSSDPVKPPRRKLPNPPPVEKP 145 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 28,017,348 Number of Sequences: 59808 Number of extensions: 614174 Number of successful extensions: 1315 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 1222 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1314 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2419355818 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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