Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0409
         (853 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025716-9|AAK39619.1|  469|Caenorhabditis elegans Hypothetical ...   143   1e-34
Z81049-5|CAE17733.2|  197|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF125451-11|AAP13763.1|  525|Caenorhabditis elegans Hypothetical...    28   9.7  

>AC025716-9|AAK39619.1|  469|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.8 protein.
          Length = 469

 Score =  143 bits (347), Expect = 1e-34
 Identities = 69/108 (63%), Positives = 86/108 (79%)
 Frame = +2

Query: 185 KDSRTPKGFHIASSYDCYSFIRCNKPGCEVDDLRGGVAGGSILQGVLTVGMEIEVRPGLV 364
           +D ++P    I  S+D       NKPG EV++L+GGVAGG++ +G+L VG EIEVRPG+V
Sbjct: 247 RDFKSPARLIIIRSFDV------NKPGSEVENLKGGVAGGTLTKGILRVGQEIEVRPGIV 300

Query: 365 SKDADGKLTCRPIFSRIVSLFAEQNELQYAVPGGLIGVGTKIEPTLCR 508
           SK A G+L CRPIFSRI SLFAE+N+L+YAVPGGLIGVGTKI+PTLCR
Sbjct: 301 SKTATGQLQCRPIFSRIDSLFAEKNQLEYAVPGGLIGVGTKIDPTLCR 348



 Score =  136 bits (329), Expect = 2e-32
 Identities = 58/84 (69%), Positives = 75/84 (89%)
 Frame = +3

Query: 3   KLKHILILQNKIDLVKEGQAKEQHEQIVKFVQGTVAEGAPIIPISAQLKYNIEVLCEYIT 182
           +L H++ILQNK+D++KE QA+E +EQI  FVQGTVAE AP+IPISAQLKYN++++CEY+ 
Sbjct: 180 QLNHLMILQNKVDIIKESQARENYEQIAGFVQGTVAENAPVIPISAQLKYNVDLVCEYLC 239

Query: 183 KKIPVPLRDFTSPPRMIVIRSFDV 254
           KKIPVP+RDF SP R+I+IRSFDV
Sbjct: 240 KKIPVPVRDFKSPARLIIIRSFDV 263



 Score =  128 bits (308), Expect = 7e-30
 Identities = 67/100 (67%), Positives = 76/100 (76%)
 Frame = +1

Query: 511 DRLVGQVLGAVGCLPGIFVKLEVSYYLLKRLLGVRTEGDKKAAKVQKLVKNEVLLVNIGS 690
           DRLVG +LGAVG LP IF+++E+S+YLL+RLLGVRTEG KK AKVQKLVK E LLVNIGS
Sbjct: 350 DRLVGHILGAVGTLPDIFIEIEISFYLLRRLLGVRTEGKKKGAKVQKLVKEETLLVNIGS 409

Query: 691 LSTGGRVIATKVDFG*KSPFTNPCCTGIGEKS*HWSRRVE 810
           LSTGGRV A K D   K    +P CT +GEK    SRR E
Sbjct: 410 LSTGGRVTAVKGDAA-KIRLNDPICTEVGEKI-AMSRRFE 447


>Z81049-5|CAE17733.2|  197|Caenorhabditis elegans Hypothetical
           protein C48D1.5 protein.
          Length = 197

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -3

Query: 236 NNHTRRRCEIP*GYGNLFCYILAEDLNIIFELSRYGYNRCTFSHSPLNEF 87
           +N  +R  EIP  +  +  YI  EDL+ I   +   + R  FS +P  +F
Sbjct: 104 DNFKQRHLEIPYEFPEVNGYIFVEDLSPICSKNGILFLRICFSKNPTRKF 153


>AF125451-11|AAP13763.1|  525|Caenorhabditis elegans Hypothetical
           protein Y37E11B.10b protein.
          Length = 525

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = -2

Query: 576 FEFDKNSR*TSNCS*YLSHKSIRRHSVGSIFVPTPIRPPGTAYCSSFCSANSETMRENMG 397
           FEF + +  T++    L  KS +    GS+    P+R PG++       +  ++ ++ M 
Sbjct: 141 FEFFQTNMSTASQPTSLDDKSQKSQKTGSMKTGIPMRSPGSSMAGKGAMSRKKSPKKQMD 200

Query: 396 --RQVNLPSASLLTKPGRTS 343
             ++  +P+A   +K  + S
Sbjct: 201 ALKKEQVPAAPDFSKKSKKS 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,868,592
Number of Sequences: 27780
Number of extensions: 471018
Number of successful extensions: 1225
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)