Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0408
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    28   1.9  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    27   2.5  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.3  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   5.8  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    26   7.6  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    26   7.6  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/65 (23%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
 Frame = +3

Query: 534  NRTPLVSVQFRDKKLASSYKQKVKAFMLKLIKIHNDDALEGSECETDLELDIWP-EDVVE 710
            N++ +  ++ ++ KLA++++ K +  + K ++ HN    + S+  ++LE  +     + E
Sbjct: 1364 NQSKIEQLELKNTKLAAAWRTKYEQVVNKSLEKHNQIRQQLSQKTSELEAKVAECHQLNE 1423

Query: 711  ELPKP 725
            +L KP
Sbjct: 1424 QLNKP 1428


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +1

Query: 340 NADEKEGNGGKITNQPLRSNDNSSELYTICVDEDLGTEESTKIFNDDISVDTP 498
           NAD   G+ G        +ND SSE      DED  T+E+ +    ++S ++P
Sbjct: 334 NADSSAGSEGVDEGTSTEANDESSE----DDDEDNNTDEANEDAQSNVSDESP 382


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 310 DSSCEDAGENNADEKEGNGGKITN 381
           D  C+D+ E N  + EG GG ++N
Sbjct: 642 DVLCDDSPEGNLPDGEGEGGIVSN 665


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 391  SRVDSLFSLHFPLFHQHCFLQHPRTNCQYL 302
            SR D++  L+  L     F  H R NC+YL
Sbjct: 2583 SRADAVAELYASLNEDDMFYGHWRRNCKYL 2612


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 358 GNGGKITNQPLRSNDNSSELYTICVDEDLGTEE 456
           G+   I  +PL+    +S+L  +C DEDLG +E
Sbjct: 498 GDDETIQLEPLKKI-GASKLVELCNDEDLGVQE 529


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -2

Query: 647 CIVIMNLYKFQHKRFYFLLVATSQFFVSKLNAHKR 543
           C+ + N Y+ QH    FL  +  Q  +SK++ + +
Sbjct: 638 CVCLFNRYRAQHNNALFLGTSNVQRAISKVSLNMK 672


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,838,931
Number of Sequences: 5004
Number of extensions: 53587
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)