Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0408
(840 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1180 + 28218386-28218649,28218725-28219202,28219309-282196... 34 0.12
05_04_0135 + 18322962-18323136,18323182-18323237,18323749-183238... 33 0.21
07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467 33 0.37
12_02_0035 - 12563503-12564405,12564494-12565611,12565709-125662... 31 1.1
01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055 31 1.1
01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713 31 1.5
02_05_0740 - 31404004-31404180,31404365-31405261,31405351-314059... 29 3.5
04_04_1203 - 31703512-31703832,31703922-31704351,31704454-317045... 29 4.6
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 28 8.1
03_01_0009 - 89127-89924,90090-90518,90582-90716,91102-91382,916... 28 8.1
02_02_0537 + 11308195-11309667 28 8.1
01_05_0645 - 23899579-23904483 28 8.1
>06_03_1180 +
28218386-28218649,28218725-28219202,28219309-28219697,
28219785-28220426,28220466-28221368
Length = 891
Score = 34.3 bits (75), Expect = 0.12
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = +1
Query: 301 INIDSSCEDAGENNADEKEGNGGKITNQPLRSNDNSSELYTICVDEDLGTEESTKIFNDD 480
I +++ E+ GE ADE+E + ++ S+DNSS+ + L + ++ DD
Sbjct: 331 IGEENAEEEEGEEGADEEENDSSDDSDSSNSSSDNSSDSSESDDSKTLVIDSDEELDEDD 390
Query: 481 ISVDTPTSNTTVV 519
I +D + T +
Sbjct: 391 IRIDLSAIHVTPI 403
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +1
Query: 295 DVINIDSSCEDAGENNADEKEGNGG--KITNQPLRSNDNSSELYTICVDEDLGTEESTKI 468
D + ++ E+ GE NA+E+EG G + N +D+S+ D + T +
Sbjct: 320 DDVELEDVDEEIGEENAEEEEGEEGADEEENDSSDDSDSSNSSSDNSSDSSESDDSKTLV 379
Query: 469 FNDDISVD 492
+ D +D
Sbjct: 380 IDSDEELD 387
>05_04_0135 +
18322962-18323136,18323182-18323237,18323749-18323885,
18324679-18324865,18324958-18325080,18325828-18326112
Length = 320
Score = 33.5 bits (73), Expect = 0.21
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Frame = -1
Query: 558 ERSQEVSCLHSL----LHYRRIRCRSVYRNIIIKNFSAFF 451
ER +E + LH L HYRR R SVY + + NFS FF
Sbjct: 14 ERMEENNLLHFLDSPNAHYRRCRILSVYLSGFLANFSPFF 53
>07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467
Length = 945
Score = 32.7 bits (71), Expect = 0.37
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +1
Query: 301 INIDSSCEDAGENNADEKEGNGGKITNQPLRSNDNSSEL 417
I +++ E+ GE ADE+E + G ++ S+DNSS+L
Sbjct: 356 IGEENAEEEEGEEGADEEENDSGDDSDSSSSSSDNSSDL 394
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +1
Query: 295 DVINIDSSCEDAGENNADEKEGNGGKITNQPLRSNDNSSELYTICVDEDLGTEESTK 465
D + ++ E+ GE NA+E+EG G + +D+ S + DL +K
Sbjct: 345 DDVEVEDIDEEIGEENAEEEEGEEGADEEENDSGDDSDSSSSSSDNSSDLSESGDSK 401
>12_02_0035 -
12563503-12564405,12564494-12565611,12565709-12566239,
12566337-12567153
Length = 1122
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 301 INIDSSCEDAGENNADEKEGNGGKITNQPLRSNDNSSE 414
I +++ E+ GE ADE+E + G ++ S+DNSS+
Sbjct: 356 IGEENAEEEEGEEGADEEENDSGDDSDSSSSSSDNSSD 393
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 301 INIDSSCEDAGENNADEKEGNGGKITNQPLRSNDNSSE 414
I +++ E+ GE ADE+E + G ++ S+DNSS+
Sbjct: 533 IGEENAEEEEGEEGADEEENDSGDDSDSSSSSSDNSSD 570
>01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055
Length = 963
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 301 INIDSSCEDAGENNADEKEGNGGKITNQPLRSNDNSSE 414
I +++ E+ GE ADE+E + G ++ S+DNSS+
Sbjct: 356 IGEENAEEEEGEEGADEEENDSGDDSDSSSSSSDNSSD 393
>01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713
Length = 946
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 322 EDAGENNADEKEGNGGKITNQPLRSNDNSSE 414
E+ GE ADE+E + G ++ S+DNSS+
Sbjct: 364 EEEGEEGADEEENDSGDDSDSSSSSSDNSSD 394
>02_05_0740 -
31404004-31404180,31404365-31405261,31405351-31405978,
31405997-31406468,31406575-31407052
Length = 883
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +1
Query: 295 DVINIDSSCEDAGENNADEKEGNGGKITNQPLRSNDNSSELYTICVDEDLGTEESTKIFN 474
D + ++ E+ GE NA+E+EG G + S+D+ S D + + ES +
Sbjct: 232 DDVEVEDVDEEIGEENAEEEEGEEGADEEENDSSDDSDSS--NSSSDNSIDSSES----D 285
Query: 475 DDISVDTPT 501
D +V PT
Sbjct: 286 DSKTVPPPT 294
>04_04_1203 -
31703512-31703832,31703922-31704351,31704454-31704551,
31704661-31704763,31704849-31704934,31705022-31705109,
31705194-31705358,31705412-31705500,31705622-31705734,
31707646-31707658
Length = 501
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 707 NNIFWPNVKF*VCLTF*TF*CIVIMNLYK 621
+ +FWPNV+F ++ T+ C +NL+K
Sbjct: 322 SEVFWPNVEFLGVVSSTTYGCSYFLNLHK 350
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/42 (28%), Positives = 27/42 (64%)
Frame = +1
Query: 391 RSNDNSSELYTICVDEDLGTEESTKIFNDDISVDTPTSNTTV 516
+S D +L + V++ + T+++TK+F+D I + T +++ V
Sbjct: 941 KSRDGQDKL-PMEVEQSMATDKNTKVFSDKILISTDPASSMV 981
>03_01_0009 -
89127-89924,90090-90518,90582-90716,91102-91382,
91634-91809,91899-92011,92157-92278,92375-92594
Length = 757
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 388 LRSNDNSSELYTICVDEDLGTEESTKIFNDDISVDTPTSNTT 513
L S D S LY+ ++ DL + + +D++S + TSN +
Sbjct: 175 LVSKDGLSSLYSSSLESDLASSSKSDDLSDEMSSSSVTSNNS 216
>02_02_0537 + 11308195-11309667
Length = 490
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/42 (28%), Positives = 27/42 (64%)
Frame = +1
Query: 391 RSNDNSSELYTICVDEDLGTEESTKIFNDDISVDTPTSNTTV 516
+S D +L + V++ + T+++TK+F+D I + T +++ V
Sbjct: 99 KSRDGQDKL-PMEVEQSMATDKNTKVFSDKILISTDPASSMV 139
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/42 (28%), Positives = 27/42 (64%)
Frame = +1
Query: 391 RSNDNSSELYTICVDEDLGTEESTKIFNDDISVDTPTSNTTV 516
+S D +L + V++ + T+++TK+F+D I + T +++ V
Sbjct: 1218 KSRDGQDKL-PMEVEQSMATDKNTKVFSDKILISTDPASSMV 1258
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,001,039
Number of Sequences: 37544
Number of extensions: 305009
Number of successful extensions: 723
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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