Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0408
         (840 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   4.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   4.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   4.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.1  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 388 LRSNDNSSELYTICVDEDLGTEESTKIFNDDISVDTPTS 504
           + + D+S  ++TICV E + ++E  ++  D      P S
Sbjct: 24  IAAQDSSGRIFTICVPE-IYSKECDEMKKDSAVKGIPVS 61


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 388 LRSNDNSSELYTICVDEDLGTEESTKIFNDDISVDTPTS 504
           + + D+S  ++TICV E + ++E  ++  D      P S
Sbjct: 24  IAAQDSSGRIFTICVPE-IYSKECDEMKKDSAVKGIPVS 61


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 388 LRSNDNSSELYTICVDEDLGTEESTKIFNDDISVDTPTS 504
           + + D+S  ++TICV E + ++E  ++  D      P S
Sbjct: 24  IAAQDSSGRIFTICVPE-IYSKECDEMKKDSAVKGIPVS 61


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 337  NNADEKEGNGGKITNQPLRSNDNSSELYTICVDEDLGTEESTKIFNDDIS 486
            N   + + N  K  NQPL  ND   +LY   +D ++   E+  +  D I+
Sbjct: 1021 NEVLQADMNALKNFNQPLLVNDQLGQLY---LDLEVEGFETKLVLEDGIT 1067


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +1

Query: 376 TNQPL---RSNDNSSELYTICVDEDLGTEESTKIFNDDISVDTPTSN 507
           T QP+   R     SE   I  D  + TE+S  + N   +++TPT++
Sbjct: 800 TTQPVISSRKEQKKSEEKNIN-DHCVTTEQSVVVTNVTTTINTPTTS 845


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,843
Number of Sequences: 438
Number of extensions: 3907
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)