Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0408
         (840 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28770.1 68416.m03591 expressed protein                             31   0.72 
At3g06910.1 68416.m00820 Ulp1 protease family protein similar to...    31   0.72 
At5g10950.1 68418.m01271 cylicin-related low similarity to SP|Q2...    31   1.3  
At4g03565.1 68417.m00490 expressed protein                             29   3.8  
At3g59050.1 68416.m06582 amine oxidase family protein similar to...    29   3.8  
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil...    28   6.7  
At5g03740.1 68418.m00335 zinc finger (C2H2 type) family protein ...    28   8.9  

>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 19/63 (30%), Positives = 33/63 (52%)
 Frame = +1

Query: 304 NIDSSCEDAGENNADEKEGNGGKITNQPLRSNDNSSELYTICVDEDLGTEESTKIFNDDI 483
           N D + E +GE+N ++KE +    + +    N+N        VD ++G +E +K   DD 
Sbjct: 812 NRDEAKERSGEDNKEDKEESKDYQSVEAKEKNENGG------VDTNVGNKEDSKDLKDDR 865

Query: 484 SVD 492
           SV+
Sbjct: 866 SVE 868


>At3g06910.1 68416.m00820 Ulp1 protease family protein similar to
           sentrin/SUMO-specific protease [Homo sapiens]
           GI:6906859; contains Pfam profile PF02902: Ulp1 protease
           family, C-terminal catalytic domain
          Length = 502

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +3

Query: 546 LVSVQFRDKKLA--SSYKQKVKAFMLKLIKIHNDDALEGSECETDLELDIWPEDVVEELP 719
           L  +  +D+K     S+K +    +  L +   D+  + SE   DL++  W ++ V++LP
Sbjct: 396 LAVINIKDQKFQYLDSFKGREPKILDALARYFVDEVRDKSE--VDLDVSRWRQEFVQDLP 453

Query: 720 KPRGSEDC 743
             R   DC
Sbjct: 454 MQRNGFDC 461


>At5g10950.1 68418.m01271 cylicin-related low similarity to
           SP|Q28092 Cylicin II (Multiple-band polypeptide II) {Bos
           taurus}
          Length = 395

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 283 ETPVDVINIDSSCEDAGENNA--DEKEGNGGKITNQPLRSNDNSSE 414
           E     + + +S  D GENN+  DEKE    KIT++ ++SN    E
Sbjct: 286 EAEPKALKLSNSNSDNGENNSSDDEKEITISKITSKKIKSNTADEE 331


>At4g03565.1 68417.m00490 expressed protein
          Length = 263

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 310 DSSCEDAGENNADEKEGNGGKITNQPLRSNDNSSELYT-IC-VDEDLGTEE 456
           +   E  GE+N D    +G    +QP    DN  +LY+  C  DED  T+E
Sbjct: 75  EGDTEREGEDNGDSIVDDGYSTNDQPEWEVDNFDDLYSDFCSPDEDCYTDE 125


>At3g59050.1 68416.m06582 amine oxidase family protein similar to
           polyamine oxidase (EC 1.5.3.11) precursor - Zea mays
           [SP|O64411]; contains Pfam profile PF01593 amine
           oxidase, flavin-containing
          Length = 488

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 707 NNIFWPNVKF*VCLTF*TF*CIVIMNLYK 621
           +N+FWPNV+F   +   ++ C   +NL+K
Sbjct: 316 DNVFWPNVEFLGVVAETSYGCSYFLNLHK 344


>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
            protein / CHD family protein similar to chromatin
            remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
            GI:6478518; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
            (CHRromatin Organization MOdifier)
          Length = 2228

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = +1

Query: 322  EDAGENNADEKEGNGGKITNQPLRSNDNSSELYTICVDEDLGTEESTKIFNDDISV 489
            + AGEN  D  E NG       L S           V +D  TE + KI  DDI++
Sbjct: 1163 DSAGENKKDTAESNGNLDVIMDLESKSRKKGGGLGDVYQDKCTEGNGKIVWDDIAI 1218


>At5g03740.1 68418.m00335 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 287

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +1

Query: 280 QETPVDVINIDSSCEDAGENNADEKEGNGGKITNQPLRSNDNSSELYTICVDEDLGTEES 459
           Q+   D    DSS +D  EN+ DE+E    K+T +     D+SS+      +ED  +EE 
Sbjct: 131 QDDDADGSEEDSSDDDDSENSGDEEE---EKVTAESDSEEDDSSD-----DEEDDSSEEE 182

Query: 460 T 462
           T
Sbjct: 183 T 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,379,555
Number of Sequences: 28952
Number of extensions: 267054
Number of successful extensions: 696
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)