Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0407
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory s...    85   1e-17
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   1.8  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    25   7.5  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   7.5  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    25   7.5  
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    25   9.9  

>SPBC1734.14c |suc1||cyclin-dependent protein kinase regulatory
           subunit Suc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 113

 Score = 84.6 bits (200), Expect = 1e-17
 Identities = 39/80 (48%), Positives = 50/80 (62%), Gaps = 9/80 (11%)
 Frame = +1

Query: 40  VDQIQYSERYTDDVYEYRHVILPPDIARMVPKSHLMTET---------EWRNLGVQQSPG 192
           +DQI YS RY DD YEYRHV+LP  + + +P  +   ET         EWR LG+ QS G
Sbjct: 22  IDQIHYSPRYADDEYEYRHVMLPKAMLKAIPTDYFNPETGTLRILQEEEWRGLGITQSLG 81

Query: 193 WLHFMVHNPEPHVLLFRRPR 252
           W  + VH PEPH+LLF+R +
Sbjct: 82  WEMYEVHVPEPHILLFKREK 101


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 405 KNFSIYYKLADINYYYITLFCLS 473
           KN  + Y+L  I YYY  L CLS
Sbjct: 56  KNILLKYELFIIYYYYYLLICLS 78


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 102 LTTGYSPHGAKIPSYDRDRVAKPWCSAESR 191
           L   YSP+G  + S  RD+  + W S  ++
Sbjct: 225 LCVNYSPNGVFLASCGRDKTIRIWDSTSNK 254


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = +1

Query: 49  IQYSERYTD---DVYEYRHVILPP 111
           + YS R  D   +VY+YR +I PP
Sbjct: 269 VTYSHRLRDSLKEVYQYRRIISPP 292


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -2

Query: 418 IEKFFCFVLTIIVSISNLNNIKL 350
           +E FF +++ ++  + N NN+KL
Sbjct: 547 LETFFAYIVHLLHGVLNRNNVKL 569


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 552 PENYPQTSLCVIQSQNNFIKTPDL 481
           PE++PQ +  +I S  + + TP+L
Sbjct: 243 PESFPQFAYSIIDSATDNLDTPEL 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,446
Number of Sequences: 5004
Number of extensions: 51534
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)