Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0407
(668 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9168| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_18788| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_6691| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0031) 30 2.0
SB_21343| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_6340| Best HMM Match : EMI (HMM E-Value=0.00055) 29 4.5
SB_20327| Best HMM Match : LIM (HMM E-Value=4.9e-16) 29 4.5
SB_4240| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
>SB_9168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -2
Query: 652 ILXMVKFIXNNNQVTTQCTLVFLCRAYEPHPSSSRELSTNKPLCY 518
+L V F ++N +T T V LC P+PS+ L+T LCY
Sbjct: 69 LLCYVMFPYSSNMLTL-ATKVLLCYVMLPYPSNVLALATKVLLCY 112
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -2
Query: 652 ILXMVKFIXNNNQVTTQCTLVFLCRAYEPHPSSSRELSTNKPLCY 518
+L V F ++N +T T V LC P+PS+ L+T LCY
Sbjct: 109 LLCYVMFPYSSNMLTL-VTKVLLCYVMFPYPSNMLTLATKVLLCY 152
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 652 ILXMVKFIXNNNQVTTQCTLVFLCRAYEPHPSSSRELSTNKPLCY 518
+L V F ++N + T V LC P+PS+ L+T LCY
Sbjct: 149 LLCYVMFPYSSNMLAL-VTKVLLCYVMFPYPSNMLALATKVLLCY 192
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 652 ILXMVKFIXNNNQVTTQCTLVFLCRAYEPHPSSSRELSTNKPLCY 518
+L V F ++N +T T V LC P+ S+ L+T LCY
Sbjct: 29 LLCYVMFPYSSNMLTL-ATKVLLCYVMFPYSSNMLALATKVLLCY 72
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 652 ILXMVKFIXNNNQVTTQCTLVFLCRAYEPHPSSSRELSTNKPLCY 518
+L V F +N + T V LC P+PS+ L+T LCY
Sbjct: 169 LLCYVMFPYPSNMLAL-ATKVLLCYVMFPYPSNMLALATKVLLCY 212
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 652 ILXMVKFIXNNNQVTTQCTLVFLCRAYEPHPSSSRELSTNKPLCY 518
+L V F +N + T V LC P+PS+ L+T LCY
Sbjct: 189 LLCYVMFPYPSNMLAL-ATKVLLCYVMFPYPSNMLTLATKVLLCY 232
>SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1855
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 87 IQACHLTTGYSPHGAKIPSYD 149
IQACH+T+G S HGA + D
Sbjct: 1249 IQACHVTSGLSDHGAVLFEID 1269
>SB_18788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 820
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 649 LXMVKFIXNNNQVTTQCTLVFLCRAYEPHPSSSR 548
L + + + V QC L+FLCRA P +SSR
Sbjct: 725 LKIKRKLRQGGAVPPQCFLMFLCRALPPPQNSSR 758
>SB_6691| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0031)
Length = 753
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 87 IQACHLTTGYSPHGAKIPSYD 149
IQACH+T+G S HGA + D
Sbjct: 427 IQACHVTSGLSDHGAVLFEID 447
>SB_21343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 369 LLIETIIVKTKQKNFSIYYKLADINYYYI 455
L + T VKT++K F+ Y + D+ YY++
Sbjct: 31 LKLMTEFVKTERKEFTTYKEYEDVYYYFL 59
>SB_6340| Best HMM Match : EMI (HMM E-Value=0.00055)
Length = 591
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 369 LLIETIIVKTKQKNFSIYYKLADINYYYI 455
L + T VKT++K F+ Y + D+ YY++
Sbjct: 324 LKLMTEFVKTERKEFTTYKEYEDVYYYFL 352
>SB_20327| Best HMM Match : LIM (HMM E-Value=4.9e-16)
Length = 339
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 49 IQYSERYTDDVYEYRHVILPPDIARMVPKSHLMTETEWRNLGVQQSP-GW 195
+ Y+ +T + ++L PD ++ KSHL + +R+L V P GW
Sbjct: 236 LAYARAFTGNRDRRDSLLLKPDTTCLISKSHLFCDYGFRHLVVGLLPNGW 285
>SB_4240| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 572
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 147 HKMGFWHHAGYIRW*DDMPVFVDVI 73
HK+G W H G R+ D + VF+ V+
Sbjct: 111 HKIGSWKHPGVARFPDFLAVFLAVL 135
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,494,899
Number of Sequences: 59808
Number of extensions: 379208
Number of successful extensions: 875
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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