Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0407
         (668 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27960.1 68415.m03389 cyclin-dependent kinase / CDK (CKS1) id...   118   5e-27
At2g27970.1 68415.m03390 cyclin-dependent kinase, putative / CDK...   116   2e-26
At4g03300.1 68417.m00451 Ulp1 protease family protein contains P...    27   8.5  

>At2g27960.1 68415.m03389 cyclin-dependent kinase / CDK (CKS1)
           identical to Cks1 protein [Arabidopsis thaliana]
           gi|2274859|emb|CAA03859
          Length = 87

 Score =  118 bits (283), Expect = 5e-27
 Identities = 44/68 (64%), Positives = 60/68 (88%)
 Frame = +1

Query: 46  QIQYSERYTDDVYEYRHVILPPDIARMVPKSHLMTETEWRNLGVQQSPGWLHFMVHNPEP 225
           QIQYSE+Y DD +EYRHV+LPP++A+++PK+ L++E EWR +GVQQS GW+H+ VH PEP
Sbjct: 3   QIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRPEP 62

Query: 226 HVLLFRRP 249
           H++LFRRP
Sbjct: 63  HIMLFRRP 70


>At2g27970.1 68415.m03390 cyclin-dependent kinase, putative / CDK,
           putative similar to Cks1 protein [Arabidopsis thaliana]
           gi|2274859|emb|CAA03859
          Length = 83

 Score =  116 bits (278), Expect = 2e-26
 Identities = 41/68 (60%), Positives = 61/68 (89%)
 Frame = +1

Query: 46  QIQYSERYTDDVYEYRHVILPPDIARMVPKSHLMTETEWRNLGVQQSPGWLHFMVHNPEP 225
           QIQYS++Y DD +EYRHV+LPP++A+++PK+ +++E+EWR +GVQQS GW+H+ +H PEP
Sbjct: 3   QIQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRPEP 62

Query: 226 HVLLFRRP 249
           H++LFRRP
Sbjct: 63  HIMLFRRP 70


>At4g03300.1 68417.m00451 Ulp1 protease family protein contains Pfam
            profile PF02902: Ulp1 protease family, C-terminal
            catalytic domain; similar to At3g24380, At5g36840,
            At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
            At2g05560, At4g08880, At1g34730, At1g27790 , At1g34740,
            At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
            At4g05280, At1g25886
          Length = 1285

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 1    FYSTYLIKTTVMPVDQIQYSERYTDDVYEY 90
            F   +L  TT+   D + Y ++Y+ D+YE+
Sbjct: 1226 FGHPFLELTTIREADMVFYRQKYSVDIYEH 1255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,983,338
Number of Sequences: 28952
Number of extensions: 264833
Number of successful extensions: 638
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)