BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0407 (668 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g27960.1 68415.m03389 cyclin-dependent kinase / CDK (CKS1) id... 118 5e-27 At2g27970.1 68415.m03390 cyclin-dependent kinase, putative / CDK... 116 2e-26 At4g03300.1 68417.m00451 Ulp1 protease family protein contains P... 27 8.5 >At2g27960.1 68415.m03389 cyclin-dependent kinase / CDK (CKS1) identical to Cks1 protein [Arabidopsis thaliana] gi|2274859|emb|CAA03859 Length = 87 Score = 118 bits (283), Expect = 5e-27 Identities = 44/68 (64%), Positives = 60/68 (88%) Frame = +1 Query: 46 QIQYSERYTDDVYEYRHVILPPDIARMVPKSHLMTETEWRNLGVQQSPGWLHFMVHNPEP 225 QIQYSE+Y DD +EYRHV+LPP++A+++PK+ L++E EWR +GVQQS GW+H+ VH PEP Sbjct: 3 QIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAVHRPEP 62 Query: 226 HVLLFRRP 249 H++LFRRP Sbjct: 63 HIMLFRRP 70 >At2g27970.1 68415.m03390 cyclin-dependent kinase, putative / CDK, putative similar to Cks1 protein [Arabidopsis thaliana] gi|2274859|emb|CAA03859 Length = 83 Score = 116 bits (278), Expect = 2e-26 Identities = 41/68 (60%), Positives = 61/68 (89%) Frame = +1 Query: 46 QIQYSERYTDDVYEYRHVILPPDIARMVPKSHLMTETEWRNLGVQQSPGWLHFMVHNPEP 225 QIQYS++Y DD +EYRHV+LPP++A+++PK+ +++E+EWR +GVQQS GW+H+ +H PEP Sbjct: 3 QIQYSDKYFDDTFEYRHVVLPPEVAKLLPKNRILSESEWRAIGVQQSRGWVHYAIHRPEP 62 Query: 226 HVLLFRRP 249 H++LFRRP Sbjct: 63 HIMLFRRP 70 >At4g03300.1 68417.m00451 Ulp1 protease family protein contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At3g24380, At5g36840, At5g35010, At3g42740, At4g05290, At2g14770, At3g43390, At2g05560, At4g08880, At1g34730, At1g27790 , At1g34740, At1g27780, At5g36850, At3g42730, At1g52020, At3g24390, At4g05280, At1g25886 Length = 1285 Score = 27.5 bits (58), Expect = 8.5 Identities = 10/30 (33%), Positives = 18/30 (60%) Frame = +1 Query: 1 FYSTYLIKTTVMPVDQIQYSERYTDDVYEY 90 F +L TT+ D + Y ++Y+ D+YE+ Sbjct: 1226 FGHPFLELTTIREADMVFYRQKYSVDIYEH 1255 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,983,338 Number of Sequences: 28952 Number of extensions: 264833 Number of successful extensions: 638 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 632 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 638 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1412971776 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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