Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0406
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual    60   3e-10
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    27   2.5  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    26   7.6  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   7.6  

>SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 60.5 bits (140), Expect = 3e-10
 Identities = 29/67 (43%), Positives = 40/67 (59%)
 Frame = +2

Query: 269 LYGVQLLLNWSWTPIFFGLKDFKLAFIEISVLSGAAVATTLSFGSVNKTAGLLLIPYLAW 448
           LY  QL  N++W P+F+GL   KLA  ++ +L+G       ++  +  TA   LIPYLAW
Sbjct: 90  LYIAQLAANFAWMPLFYGLAKPKLALADLGILTGLVGWLAKTWWPLAPTASKWLIPYLAW 149

Query: 449 LGYASSL 469
           LGYA  L
Sbjct: 150 LGYAGYL 156



 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 28/74 (37%), Positives = 42/74 (56%)
 Frame = +3

Query: 6   VMANWPALGSIILPNVGGWANGLFFAGQIRKDNSEKSWYDELKKPSWTPPKWVFGPAWTV 185
           +  NW    + ++P   GW  G  +  + RKD      Y+  K+P + PP   FGPAWT+
Sbjct: 11  ISKNW--WSASLVPVACGWFIGNSY--KPRKD------YENKKQPKFHPPASAFGPAWTL 60

Query: 186 LYSSMGYASYLIWE 227
           LY +MGYAS+L ++
Sbjct: 61  LYLTMGYASHLAYK 74


>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = -3

Query: 417 AVLLTLPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSC----TPYNVR 262
           A L T P+  V  T    +T++S   ++K++    +G+ ++L+ SC    TP+ +R
Sbjct: 132 APLGTYPHPCVHLTV---NTDVSSPLAIKTYVSSPVGITERLADSCAFVPTPFTIR 184


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 151 GVQLGFFNSSYQDFSLLSLRI*PAKNSPLAHPPTFGRII 35
           G  LG  N++Y+     SL I   + +P    PTFGR+I
Sbjct: 385 GELLGSQNTTYKPVYYHSLLIECCRIAPKILAPTFGRVI 423


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +3

Query: 372 QQWQRHCHSAVSIRQPVCYSYHTWLGSDMPAPFLTTS 482
           Q+W   CH ++      CY     +   +PA  +T S
Sbjct: 799 QKWNEACHVSIHSLMLCCYELPVSIRKQLPAILVTLS 835


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,595,360
Number of Sequences: 5004
Number of extensions: 77504
Number of successful extensions: 204
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)