Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0406
         (836 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0370 + 2909216-2909797                                           36   0.030
01_06_0061 - 26071984-26072343,26072792-26073139,26073228-260733...    30   2.0  
01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-70...    30   2.0  
01_01_0088 + 688792-691441,691629-693013                               30   2.0  
01_05_0008 - 17063377-17063813,17064937-17065052,17065284-170657...    29   4.6  
01_01_0320 - 2578911-2579144,2579243-2579455,2579580-2579858,257...    29   4.6  
04_04_1665 - 35164114-35164188,35164361-35164415,35164535-351648...    29   6.1  

>05_01_0370 + 2909216-2909797
          Length = 193

 Score = 36.3 bits (80), Expect = 0.030
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = +2

Query: 263 LTLYGVQLLLNWSWTPIFFGLKDFKLAFIEISVLSGAAVATTLSFGSVNKTAGLLLIPYL 442
           L  +  QL+   +W P+  GL          + ++  A A    FG VN  AG L  P +
Sbjct: 119 LAPFVAQLVAALAWAPLALGLAAPAAGLACCAAMAAGAAACARGFGGVNPVAGDLAKPCV 178

Query: 443 AWLGYASSLSY 475
           AW    + ++Y
Sbjct: 179 AWAVLLAVINY 189


>01_06_0061 -
           26071984-26072343,26072792-26073139,26073228-26073371,
           26073454-26073723,26075019-26075825
          Length = 642

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/31 (58%), Positives = 22/31 (70%), Gaps = 4/31 (12%)
 Frame = +2

Query: 389 LSFGSV-NKT---AGLLLIPYLAWLGYASSL 469
           L+FGS+ N T    G+LL+  LAWLG ASSL
Sbjct: 551 LTFGSLANSTPYLGGILLVIVLAWLGAASSL 581


>01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-708105,
            708462-708702,708783-708857,708932-709017,709451-709523,
            709637-709961,710092-711750,711938-713322
          Length = 1788

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
 Frame = +3

Query: 90   IRKDNSEKSWYDELKKPSWTPPKWVFGPAWTVLYSSMGYASYLIWEECDG----FTEDAS 257
            +RK  + K W + L+K  W   K       T L  S  Y  + + ++C      F ED  
Sbjct: 901  LRKKPTRKHWMEILEKEEWLKQKDGDDSIITALKISYDYLPFYL-KKCFSYLALFPEDYE 959

Query: 258  YLSHCTEYSCYSTGLGLLFSS 320
            + S   E SCY   +G++ SS
Sbjct: 960  FDS--LEISCYWDSIGIINSS 978


>01_01_0088 + 688792-691441,691629-693013
          Length = 1344

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
 Frame = +3

Query: 90  IRKDNSEKSWYDELKKPSWTPPKWVFGPAWTVLYSSMGYASYLIWEECDG----FTEDAS 257
           +RK  + K W + L+K  W   K       T L  S  Y  + + ++C      F ED  
Sbjct: 457 LRKKPTRKHWMEILEKEEWLKQKDGDDSIITALKISYDYLPFYL-KKCFSYLALFPEDYE 515

Query: 258 YLSHCTEYSCYSTGLGLLFSS 320
           + S   E SCY   +G++ SS
Sbjct: 516 FDS--LEISCYWDSIGIINSS 534


>01_05_0008 -
           17063377-17063813,17064937-17065052,17065284-17065728,
           17066421-17066760
          Length = 445

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 25/84 (29%), Positives = 32/84 (38%)
 Frame = -3

Query: 366 DSTEISMNASLKSFNPKKIGVQDQLSSSCTPYNVRGRMHLQ*NHHIPPR*GKRHIPCCCR 187
           DS E  + +  KSF  K +   +        + VRG M    NH       K H      
Sbjct: 309 DSDEARLRSRRKSFWEKAVETDELCGKDDAWWGVRGYMRDNFNHSNKAISYKEHFQNSRL 368

Query: 186 EQSKLDQIPTLGESSLASLTHHTR 115
            +S LD    L   +  SLTH TR
Sbjct: 369 VESVLDLYWELPPVAGPSLTHQTR 392


>01_01_0320 -
           2578911-2579144,2579243-2579455,2579580-2579858,
           2579961-2580050,2580258-2580439,2581366-2582470
          Length = 700

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 114 SWYDELKKPSWTPPK 158
           SW +E+KKPSW P K
Sbjct: 600 SWQEEIKKPSWHPYK 614


>04_04_1665 -
           35164114-35164188,35164361-35164415,35164535-35164844,
           35165401-35165521,35165701-35165796,35166163-35166266,
           35167368-35167485
          Length = 292

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 133 RSQAGLPQSGYLVQLGLFSTAAWDMPLTSSGRNVMVLLKMHPTSHIVRSTAAT-QLVLDS 309
           R QAGLP+ G++  +       WD  + S  RNV+  L+ +   ++VR   A  +  L  
Sbjct: 37  RLQAGLPKYGFVKTIVTKFLGRWDQGMGS--RNVIRYLRENYERYVVRQKRAEGKKALKD 94

Query: 310 YFL 318
           Y L
Sbjct: 95  YLL 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,092,888
Number of Sequences: 37544
Number of extensions: 498265
Number of successful extensions: 1274
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)