Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0406
         (836 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_50245| Best HMM Match : RVT_1 (HMM E-Value=1.4e-16)                 29   6.2  
SB_46214| Best HMM Match : A_amylase_inhib (HMM E-Value=2.1)           29   6.2  

>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2532

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = +1

Query: 184  FSTAAWDMPLTSSGRNVMVLLKMHPTSHIVRSTAATQLVLDSYFLRIEGLQAGIH*DLSA 363
            F+    D+PL    R        HP S I+RS  ++ L  +    ++ GLQ   +   S 
Sbjct: 1347 FACKKHDLPLKGFDRTC----PCHPQSWIIRSKISSNLTGEPPKRKLNGLQQVCNNMASV 1402

Query: 364  VRGSSGNDTVIRQCQ 408
            + G+ G D   R C+
Sbjct: 1403 LSGTEGKDNFSRLCR 1417


>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 766

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = +3

Query: 6   VMANWPALG----SIILPNVGGWANGLFFAGQIRKDNSEKSWYDELKKPSWTPP 155
           ++ NWP       S+++P +  W      +G+       + W  + K+P W PP
Sbjct: 397 ILINWPFQQEYRTSLLIPRIF-WVKDSHMSGECGLGALSRDWVYDRKRPRWRPP 449


>SB_50245| Best HMM Match : RVT_1 (HMM E-Value=1.4e-16)
          Length = 311

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +2

Query: 734 ALVGSVVVSLYRTCIGKPLE-FLPFG 808
           +L GSVVV L+   +GKP+E  LP G
Sbjct: 3   SLPGSVVVRLFHQILGKPMEAVLPLG 28


>SB_46214| Best HMM Match : A_amylase_inhib (HMM E-Value=2.1)
          Length = 344

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 740 VGSVVVSLYRTCIGKPLE-FLPFG 808
           +GSVVV L+   +GKP+E  LP G
Sbjct: 275 IGSVVVRLFHQILGKPMEAVLPLG 298


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,561,590
Number of Sequences: 59808
Number of extensions: 573815
Number of successful extensions: 1296
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)