Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0406
(836 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81048-2|CAB02840.1| 553|Caenorhabditis elegans Hypothetical pr... 43 3e-04
Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical p... 34 0.11
Z50858-5|CAA90722.1| 534|Caenorhabditis elegans Hypothetical pr... 30 2.3
U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical pr... 30 2.3
U13074-1|AAA96982.1| 534|Caenorhabditis elegans steroid hormone... 30 2.3
AF273840-1|AAG15187.1| 553|Caenorhabditis elegans sex-1 protein. 30 2.3
AF049869-1|AAC77795.1| 556|Caenorhabditis elegans SEX-1 protein. 30 2.3
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 29 4.1
U21854-1|AAA87454.1| 310|Caenorhabditis elegans cCAF1 protein p... 29 4.1
AL132860-28|CAB60501.1| 310|Caenorhabditis elegans Hypothetical... 29 4.1
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 29 4.1
AF036700-4|AAV34787.1| 437|Caenorhabditis elegans Hypothetical ... 29 5.4
AF036700-3|AAB88366.2| 479|Caenorhabditis elegans Hypothetical ... 29 5.4
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p... 28 9.5
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p... 28 9.5
>Z81048-2|CAB02840.1| 553|Caenorhabditis elegans Hypothetical
protein C41G7.3 protein.
Length = 553
Score = 42.7 bits (96), Expect = 3e-04
Identities = 24/75 (32%), Positives = 40/75 (53%)
Frame = +2
Query: 257 LPLTLYGVQLLLNWSWTPIFFGLKDFKLAFIEISVLSGAAVATTLSFGSVNKTAGLLLIP 436
L L LYG + L + PI K+ + +V+S A A + +F ++K AGLL++P
Sbjct: 470 LALGLYGASVTLAVATIPIV-KKKELGCLWKNTTVVSLTAAAASFAFYKIDKKAGLLVVP 528
Query: 437 YLAWLGYASSLSYYI 481
+ W + + L+Y I
Sbjct: 529 FAVWTAFYAYLAYSI 543
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 96 KDNSEKSWYDELKKPSWTPPK-WVFGPAWTVLYSSMGYASYLIWEECDGF 242
KD W+ LKKP+W P V+ + S +GYASYL+++ GF
Sbjct: 414 KDQQVADWWAALKKPNWAPKDVRVYSAVDLLTLSPLGYASYLVYKNGGGF 463
>Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical protein
C47E8.8 protein.
Length = 1675
Score = 34.3 bits (75), Expect = 0.11
Identities = 23/61 (37%), Positives = 31/61 (50%)
Frame = -3
Query: 402 LPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSCTPYNVRGRMHLQ*NHHIPP 223
LP D V + D E++ S KS P++IG D SSS +VR R+ L H IP
Sbjct: 878 LPEDPVSVQSRSDVCEVTAETSQKSVGPERIG-GDAQSSSENTVSVRNRVDL---HGIPS 933
Query: 222 R 220
+
Sbjct: 934 K 934
>Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical
protein C47E8.8 protein.
Length = 1675
Score = 34.3 bits (75), Expect = 0.11
Identities = 23/61 (37%), Positives = 31/61 (50%)
Frame = -3
Query: 402 LPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSCTPYNVRGRMHLQ*NHHIPP 223
LP D V + D E++ S KS P++IG D SSS +VR R+ L H IP
Sbjct: 878 LPEDPVSVQSRSDVCEVTAETSQKSVGPERIG-GDAQSSSENTVSVRNRVDL---HGIPS 933
Query: 222 R 220
+
Sbjct: 934 K 934
>Z50858-5|CAA90722.1| 534|Caenorhabditis elegans Hypothetical
protein F44A6.2 protein.
Length = 534
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/77 (24%), Positives = 39/77 (50%)
Frame = +1
Query: 421 FVTHTILGLARICQLPFLLHLEEQS*TGEGQ*RS*QWNILLYALNIDVRKGINFEQIIIR 600
F +T + + I PF + + E S R W I + +++D+++ +NF + I +
Sbjct: 267 FSFYTDIKIRSIVARPFNVRINEDSKMN----RLNAWQIYAHEIDVDIKEVVNFVKEIPK 322
Query: 601 FH*ISTVHRNVIIINNA 651
F+ I+ + V++ NA
Sbjct: 323 FNFINGNDKAVLLRKNA 339
>U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical
protein D1014.7 protein.
Length = 492
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Frame = +3
Query: 258 YLSHCTEYS--CYSTGLGL----LF---SSD*RTSSWHSLRSQCCPGQQWQRHCHSAVSI 410
Y +H TE++ ++ L L LF SS+ W+ +R+ P RH A+ I
Sbjct: 42 YFTHTTEFNKNIHNAPLSLRENTLFAFNSSNCPYKEWNQIRTDSIPNAN--RHADWAIQI 99
Query: 411 RQPVCYSYHT 440
++P Y YHT
Sbjct: 100 KKPSKYLYHT 109
>U13074-1|AAA96982.1| 534|Caenorhabditis elegans steroid hormone
receptor familymember CNR14 protein.
Length = 534
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/77 (24%), Positives = 39/77 (50%)
Frame = +1
Query: 421 FVTHTILGLARICQLPFLLHLEEQS*TGEGQ*RS*QWNILLYALNIDVRKGINFEQIIIR 600
F +T + + I PF + + E S R W I + +++D+++ +NF + I +
Sbjct: 267 FSFYTDIKIRSIVARPFNVRINEDSKMN----RLNAWQIYAHEIDVDIKEVVNFVKEIPK 322
Query: 601 FH*ISTVHRNVIIINNA 651
F+ I+ + V++ NA
Sbjct: 323 FNFINGNDKAVLLRKNA 339
>AF273840-1|AAG15187.1| 553|Caenorhabditis elegans sex-1 protein.
Length = 553
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/77 (24%), Positives = 39/77 (50%)
Frame = +1
Query: 421 FVTHTILGLARICQLPFLLHLEEQS*TGEGQ*RS*QWNILLYALNIDVRKGINFEQIIIR 600
F +T + + I PF + + E S R W I + +++D+++ +NF + I +
Sbjct: 264 FSFYTDIKIRSIVARPFNVRINEDSKMN----RLNAWQIYAHEIDVDIKEVVNFVKEIPK 319
Query: 601 FH*ISTVHRNVIIINNA 651
F+ I+ + V++ NA
Sbjct: 320 FNFINGNDKAVLLRKNA 336
>AF049869-1|AAC77795.1| 556|Caenorhabditis elegans SEX-1 protein.
Length = 556
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/77 (24%), Positives = 39/77 (50%)
Frame = +1
Query: 421 FVTHTILGLARICQLPFLLHLEEQS*TGEGQ*RS*QWNILLYALNIDVRKGINFEQIIIR 600
F +T + + I PF + + E S R W I + +++D+++ +NF + I +
Sbjct: 267 FSFYTDIKIRSIVARPFNVRINEDSKMN----RLNAWQIYAHEIDVDIKEVVNFVKEIPK 322
Query: 601 FH*ISTVHRNVIIINNA 651
F+ I+ + V++ NA
Sbjct: 323 FNFINGNDKAVLLRKNA 339
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = +2
Query: 182 CSLQQHGICLLPHLGGM*---WFY*RCILPLTLYGVQLLLNWSWTPIFF 319
C H C+ P L + W RCI+P ++ +L+W W I +
Sbjct: 346 CPSSYHAYCIDPPLTEIPEGEWSCPRCIIPEPAQRIEKILSWRWKEISY 394
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = +2
Query: 182 CSLQQHGICLLPHLGGM*---WFY*RCILPLTLYGVQLLLNWSWTPIFF 319
C H C+ P L + W RCI+P ++ +L+W W I +
Sbjct: 346 CPSSYHAYCIDPPLTEIPEGEWSCPRCIIPEPAQRIEKILSWRWKEISY 394
>U21854-1|AAA87454.1| 310|Caenorhabditis elegans cCAF1 protein
protein.
Length = 310
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 281 QLLLNWSWTPIFFGLKDFKL---AFIEISVLSGAAVATTLSFGSVNKTAGLLLIPYLAWL 451
Q N+S+ F + ++ A I+ ++L + T + FG + T+GL+ P + WL
Sbjct: 107 QFNFNFSFAEDMFSHESVEMLRQAGIDFTLLQNNGIPTAV-FGELLTTSGLITDPRITWL 165
Query: 452 GYASSLSY 475
++S +
Sbjct: 166 TFSSGYDF 173
>AL132860-28|CAB60501.1| 310|Caenorhabditis elegans Hypothetical
protein Y56A3A.20 protein.
Length = 310
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 281 QLLLNWSWTPIFFGLKDFKL---AFIEISVLSGAAVATTLSFGSVNKTAGLLLIPYLAWL 451
Q N+S+ F + ++ A I+ ++L + T + FG + T+GL+ P + WL
Sbjct: 107 QFNFNFSFAEDMFSHESVEMLRQAGIDFTLLQNNGIPTAV-FGELLTTSGLITDPRITWL 165
Query: 452 GYASSLSY 475
++S +
Sbjct: 166 TFSSGYDF 173
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = +2
Query: 182 CSLQQHGICLLPHLGGM*---WFY*RCILPLTLYGVQLLLNWSWTPIFF 319
C H C+ P L + W RCI+P ++ +L+W W I +
Sbjct: 346 CPSSYHAYCIDPPLTEIPEGEWSCPRCIIPEPAQRIEKILSWRWKEISY 394
>AF036700-4|AAV34787.1| 437|Caenorhabditis elegans Hypothetical
protein M04G7.3b protein.
Length = 437
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 351 SMNASLKSFNPKKIGVQDQLSSSCTPYN 268
S+N+S+K P KIG+ LS+ TP N
Sbjct: 401 SLNSSMKKSLPPKIGLPHPLSAEKTPLN 428
>AF036700-3|AAB88366.2| 479|Caenorhabditis elegans Hypothetical
protein M04G7.3a protein.
Length = 479
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 351 SMNASLKSFNPKKIGVQDQLSSSCTPYN 268
S+N+S+K P KIG+ LS+ TP N
Sbjct: 443 SLNSSMKKSLPPKIGLPHPLSAEKTPLN 470
>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 295 LVLDSYFLRIEGLQAGIH*DLSAVRGSSGNDTVIRQCQ 408
L+L +++ +E L H D V S GNDT+ CQ
Sbjct: 11 LLLSNFWPTVESLNYKCHNDQILVVQSFGNDTIRMHCQ 48
>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 295 LVLDSYFLRIEGLQAGIH*DLSAVRGSSGNDTVIRQCQ 408
L+L +++ +E L H D V S GNDT+ CQ
Sbjct: 11 LLLSNFWPTVESLNYKCHNDQILVVQSFGNDTIRMHCQ 48
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,815,296
Number of Sequences: 27780
Number of extensions: 436546
Number of successful extensions: 1079
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -