Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0406
         (836 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    26   0.37 
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    25   1.1  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    25   1.1  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    25   1.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    24   1.5  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 26.2 bits (55), Expect = 0.37
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 175 AGPNTHFGGVQLGFFNSS 122
           +GP    GGV+LG+FN S
Sbjct: 55  SGPEESSGGVELGWFNDS 72


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
 Frame = -3

Query: 210 RHIPCCCREQSKLDQIPTLGES--SLASLTHHTR 115
           +H   CCR       + + GES   L +   HTR
Sbjct: 53  KHTDACCRTHDMCPDVMSAGESKHGLTNTASHTR 86


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
 Frame = -3

Query: 210 RHIPCCCREQSKLDQIPTLGES--SLASLTHHTR 115
           +H   CCR       + + GES   L +   HTR
Sbjct: 58  KHTDACCRTHDMCPDVMSAGESKHGLTNTASHTR 91


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
 Frame = -3

Query: 210 RHIPCCCREQSKLDQIPTLGES--SLASLTHHTR 115
           +H   CCR       + + GES   L +   HTR
Sbjct: 58  KHTDACCRTHDMCPDVMSAGESKHGLTNTASHTR 91


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = +3

Query: 144 WTPPKWVFGPAWTVLYSSMGYASYLIWEECDGF 242
           W    ++   AW + Y  M   S L W  C+ +
Sbjct: 72  WMNVYYIVILAWAIFYFFMSMRSELPWGSCNNY 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,965
Number of Sequences: 438
Number of extensions: 5428
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)