Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0406
         (836 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16200.1 68416.m02045 expressed protein                             30   1.7  
At2g47770.1 68415.m05963 benzodiazepine receptor-related contain...    30   1.7  
At1g11340.1 68414.m01302 S-locus lectin protein kinase family pr...    30   2.2  
At2g23610.1 68415.m02817 esterase, putative similar to ethylene-...    29   2.9  
At5g41870.1 68418.m05098 glycoside hydrolase family 28 protein /...    28   6.7  
At5g16010.1 68418.m01872 3-oxo-5-alpha-steroid 4-dehydrogenase f...    28   6.7  
At4g08878.1 68417.m01463 inorganic phosphate transporter, putati...    28   6.7  
At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containi...    28   8.8  
At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containi...    28   8.8  

>At3g16200.1 68416.m02045 expressed protein
          Length = 452

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 24/84 (28%), Positives = 34/84 (40%)
 Frame = -3

Query: 366 DSTEISMNASLKSFNPKKIGVQDQLSSSCTPYNVRGRMHLQ*NHHIPPR*GKRHIPCCCR 187
           DS E  M +  K F  K +  ++      T + V+G M    NH   P    +H      
Sbjct: 321 DSDEARMRSKRKKFWEKAVDTEELCGPGETWWGVKGEMRDDFNHTNTPISYNQHFQNSRY 380

Query: 186 EQSKLDQIPTLGESSLASLTHHTR 115
            +S LD    L   +  SLTH +R
Sbjct: 381 VESILDVYWELPPVAGPSLTHQSR 404


>At2g47770.1 68415.m05963 benzodiazepine receptor-related contains
           weak similarity to Peripheral-type benzodiazepine
           receptor (PBR) (PKBS) (Mitochondrial benzodiazepine
           receptor) (Swiss-Prot:P30536) [Homo sapiens]
          Length = 196

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 132 KKPSWTPPKWVFGPAWTVLYSSMGYASYLIW 224
           K  SW PP W+           MG A++L+W
Sbjct: 79  KSSSWIPPLWLLHTTCLASSGLMGLAAWLVW 109


>At1g11340.1 68414.m01302 S-locus lectin protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains S-locus glycoprotein family domain,
           Pfam:PF00954
          Length = 901

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 120 TRTFHC-CLYGFDPQRTVHWPIHRHLGG*SNRVQAN 16
           ++TF C CL GF+P+   HW +    GG + + +A+
Sbjct: 369 SKTFECTCLPGFEPKFPRHWFLRDSSGGCTKKKRAS 404


>At2g23610.1 68415.m02817 esterase, putative similar to
           ethylene-induced esterase [Citrus sinensis] GI:14279437,
           polyneuridine aldehyde esterase [Rauvolfia serpentina]
           GI:6651393; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 263

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +3

Query: 75  FFAGQIRKDNSEKSWYDEL---KKPSWTPPKWVFGP 173
           F   ++RK+ S + W D +   +KP +    W+FGP
Sbjct: 121 FVWDKLRKETSREEWLDTVFTSEKPDFPSEFWIFGP 156


>At5g41870.1 68418.m05098 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase PG1 [Glycine max]
           GI:5669846; contains PF00295: Glycosyl hydrolases family
           28
          Length = 449

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 206 ISHAAVENSPSWTKYPLWGS 147
           +SH  ++NSP WT +P++ S
Sbjct: 195 VSHVVLQNSPFWTLHPVYCS 214


>At5g16010.1 68418.m01872 3-oxo-5-alpha-steroid 4-dehydrogenase
           family protein / steroid 5-alpha-reductase family
           protein similar to steroid 5alpha-reductase - Rattus
           norvegicus, PIR:A34239 [SP|24008]; contains Pfam
           3-oxo-5-alpha-steroid 4-dehydrogenase domain PF02544
          Length = 268

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +2

Query: 263 LTLYGVQLLLNWSWTPIFFGLKDFKLAFIEISVLSGAAVATTLSFGSVNKTAGLLLIPYL 442
           +++ GV  L N  W+ I    +   L + +  V S +       FGS++   G+LL+   
Sbjct: 20  MSVVGVAALANIGWSEI----RGNHLKYSKFGVSSSSPQPQKERFGSISSRNGMLLLYTP 75

Query: 443 AWLGYASS 466
           A+L  ASS
Sbjct: 76  AFLAAASS 83


>At4g08878.1 68417.m01463 inorganic phosphate transporter, putative
           similar to inorganic phosphate transporter (GI:3869190)
           [Arabidopsis thaliana]
          Length = 280

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +2

Query: 311 IFFGLKDFKLAF-----IEISVLSGAAVATTLSFGSVNKTAGLLLIPYLAWLGYASSLSY 475
           IFFG    KL       + + +++  ++A++LSFG   KT  + L  +  WLG+     Y
Sbjct: 68  IFFGCLGDKLGRKRVYGLTLLIMTICSIASSLSFGKDPKTVMVTLCFFRFWLGFGIGGDY 127


>At1g18900.2 68414.m02353 pentatricopeptide (PPR) repeat-containing
           protein low similarity to 67kD chloroplastic RNA-binding
           protein, P67 [Arabidopsis thaliana] GI:9755842; contains
           Pfam profile PF01535: PPR repeat
          Length = 860

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 69  GLFFAGQIRKDNSEKSWYDELKKPSWTPPKWVFGPAWTVLYSSMGYASYLIWEECDG 239
           G    G++ K    K   D+  +PS  P      PA  +   S+ YAS ++ EE +G
Sbjct: 69  GCILPGEVTKPVVPKK-VDDFGRPSLLPQHVSSSPALPLKSHSVNYASTVVREEVEG 124


>At1g18900.1 68414.m02352 pentatricopeptide (PPR) repeat-containing
           protein low similarity to 67kD chloroplastic RNA-binding
           protein, P67 [Arabidopsis thaliana] GI:9755842; contains
           Pfam profile PF01535: PPR repeat
          Length = 860

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 69  GLFFAGQIRKDNSEKSWYDELKKPSWTPPKWVFGPAWTVLYSSMGYASYLIWEECDG 239
           G    G++ K    K   D+  +PS  P      PA  +   S+ YAS ++ EE +G
Sbjct: 69  GCILPGEVTKPVVPKK-VDDFGRPSLLPQHVSSSPALPLKSHSVNYASTVVREEVEG 124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,683,961
Number of Sequences: 28952
Number of extensions: 401128
Number of successful extensions: 1063
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)