Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0404
         (656 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1GG39 Cluster: Putative uncharacterized protein; n=2; ...    38   0.16 
UniRef50_P36084 Cluster: Splicing factor MUD2; n=2; Saccharomyce...    34   2.6  
UniRef50_Q6C3S3 Cluster: Similarities with sp|P32782 Candida alb...    34   3.5  
UniRef50_UPI0001554558 Cluster: PREDICTED: similar to Chain A, C...    33   4.6  
UniRef50_A4BSC2 Cluster: Chemotaxis protein histidine kinase and...    33   6.0  
UniRef50_UPI0000384B3B Cluster: COG1208: Nucleoside-diphosphate-...    33   8.0  

>UniRef50_A1GG39 Cluster: Putative uncharacterized protein; n=2;
           Actinomycetales|Rep: Putative uncharacterized protein -
           Salinispora arenicola CNS205
          Length = 654

 Score = 38.3 bits (85), Expect = 0.16
 Identities = 22/56 (39%), Positives = 27/56 (48%)
 Frame = +3

Query: 150 RSSREPSQSFHRVCTGSPVRAATSILSWPHYLSGCISSTRRRRRPEVAKGTIRSSQ 317
           R+ R+P Q FHR  TG   RAA    SWPH+      + RRR  P       R+ Q
Sbjct: 192 RADRQPGQPFHRGDTGHLRRAAR---SWPHHRHDHARAGRRRSNPPAGSPPRRADQ 244


>UniRef50_P36084 Cluster: Splicing factor MUD2; n=2; Saccharomyces
           cerevisiae|Rep: Splicing factor MUD2 - Saccharomyces
           cerevisiae (Baker's yeast)
          Length = 527

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = +1

Query: 223 FCRGPIIYLAVLAALGEGGDPKSQKELFEVLNLPAEACKRERYYQIANSLATPGTDVHXT 402
           FCRG +I L  L  +GEG D +  KELF  LN+      +  +Y+ +++    G +   T
Sbjct: 309 FCRGTVIALENLENIGEGEDYR-MKELFSSLNV-TNGTAKPLFYKCSSNTNNTGKESEFT 366


>UniRef50_Q6C3S3 Cluster: Similarities with sp|P32782 Candida
           albicans PDE1 3; n=1; Yarrowia lipolytica|Rep:
           Similarities with sp|P32782 Candida albicans PDE1 3 -
           Yarrowia lipolytica (Candida lipolytica)
          Length = 535

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +2

Query: 8   HVSLLVASFAAFKPQASEAQSLIGNLVQG--SHVFGNLIPPNICNE 139
           H+S ++ + AAF PQ ++  + +  ++Q    HVF  +I PN+ NE
Sbjct: 126 HISGVIMNSAAFSPQQTKRLAGLPRVIQALKDHVFNGVIWPNLTNE 171


>UniRef50_UPI0001554558 Cluster: PREDICTED: similar to Chain A,
           Crystal Structure Of Rat Carnitine Palmitoyltransferase
           Ii; n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
           similar to Chain A, Crystal Structure Of Rat Carnitine
           Palmitoyltransferase Ii - Ornithorhynchus anatinus
          Length = 606

 Score = 33.5 bits (73), Expect = 4.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 149 DSDLHCRCLEELNCQRHVNLGQGYLSGFGLQK 54
           DS L C CL++++ Q HV L    L G+G  +
Sbjct: 216 DSALFCLCLDDISTQNHVELSHCMLHGYGYNR 247


>UniRef50_A4BSC2 Cluster: Chemotaxis protein histidine kinase and
            related kinase; n=2; Gammaproteobacteria|Rep: Chemotaxis
            protein histidine kinase and related kinase - Nitrococcus
            mobilis Nb-231
          Length = 1936

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
 Frame = +1

Query: 187  FVQGRRSE--QQLPFCRGPIIYLAVLAALG-EGGDPKSQKELFEVLN-----LPAEACKR 342
            + +GR  +   Q    RG  +  AV+ ALG EG +     EL   +      LP  A K 
Sbjct: 909  YAEGRALDAPDQAVLKRGARVIRAVVEALGREGAELPDVSELVRDIGTRRAALPKSAAKH 968

Query: 343  ERYYQIANSLATPGTD 390
            E  Y+  +SLA PG D
Sbjct: 969  EDRYEAESSLAPPGAD 984


>UniRef50_UPI0000384B3B Cluster: COG1208:
           Nucleoside-diphosphate-sugar pyrophosphorylase involved
           in lipopolysaccharide biosynthesis/translation
           initiation factor 2B, gamma/epsilon subunits
           (eIF-2Bgamma/eIF-2Bepsilon); n=1; Magnetospirillum
           magnetotacticum MS-1|Rep: COG1208:
           Nucleoside-diphosphate-sugar pyrophosphorylase involved
           in lipopolysaccharide biosynthesis/translation
           initiation factor 2B, gamma/epsilon subunits
           (eIF-2Bgamma/eIF-2Bepsilon) - Magnetospirillum
           magnetotacticum MS-1
          Length = 380

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +1

Query: 238 IIYLAVLAALGEGGDPKSQKELFEVLNLPAEACKRE---RYYQIANSLATPGTDVHXTTT 408
           I+  AV+  + EGG+P  +K ++ VL    +    E   RYY + +    P T+      
Sbjct: 148 ILTRAVIDLIPEGGNPSFEKSVYPVLVERRQLAAFETDHRYYSVGSHERLPLTEAFLARN 207

Query: 409 RALILDNNLIIN 444
           + ++LD +  +N
Sbjct: 208 KTVLLDRDGTLN 219


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 683,267,115
Number of Sequences: 1657284
Number of extensions: 13836484
Number of successful extensions: 36337
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 35223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36329
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)