Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0404
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 31 0.19
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 28 1.4
SPAC1B3.07c |vps28||ESCRT I complex subunit Vps28|Schizosaccharo... 27 1.8
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch... 27 3.1
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p... 27 3.1
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 26 4.2
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 26 5.5
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 25 7.3
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 25 7.3
SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer... 25 9.6
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 25 9.6
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p... 25 9.6
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 30.7 bits (66), Expect = 0.19
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -1
Query: 638 ASGNAVVQSPL*SKVSNQERIPERSLIWRYFSLLNRIFVV 519
A ++++ + KV N IP + +W+Y +L+ RIF++
Sbjct: 321 AGKSSIINTLRKKKVCNVAPIPGETKVWQYVALMKRIFLI 360
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 27.9 bits (59), Expect = 1.4
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = +2
Query: 233 APLSIWLY*QHSEKEETRSRKRNYSKFSIYLPKHVNAKGITKL 361
A L WLY SEK E S+ NY + S+ H+NAK K+
Sbjct: 2124 AYLGNWLYTTKSEKTELVSK--NYFEKSLSHMSHLNAKEKAKI 2164
>SPAC1B3.07c |vps28||ESCRT I complex subunit
Vps28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 453 VQVXSHSKTTAYSASSNKEHLTDHENPIEKREITPD 560
+QV +K + N ++TD N +EKRE+ D
Sbjct: 201 IQVSCRNKLVQWLIKINNMNITDQLNDVEKRELLYD 236
>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 830
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +3
Query: 432 SNNKPGXVQVXSHSKTTAYSASSNKEHLTDHENPIEKREITPDEGSFGNSF 584
++NK V H + + SN E LT HE I +P+EG F SF
Sbjct: 429 TSNKSSAYVVVDHHPIISSTQLSN-ESLT-HEQSINGNSPSPNEGVFQGSF 477
>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +3
Query: 126 TSAMKIRVRSSREPSQSFHRVCTGSPVRAATSILSWPHYLSGCISSTRRRRRPE--VAKG 299
T+ M+ ++S + S V G A SI + GC+ + R RP V G
Sbjct: 122 TTGMRYSLQSREIIADSIETVMQGQWYDANVSIPGCDKNMPGCLIAMGRFNRPSIMVYGG 181
Query: 300 TIRSSQFTCRS 332
+IR+ C++
Sbjct: 182 SIRAGHSPCQN 192
>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 735
Score = 26.2 bits (55), Expect = 4.2
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Frame = -1
Query: 329 SAGKLRTSNSSFCDFGSPPSPSAANTAR*IMGPRQNGSCCSDRRP---CTNAMKTLRGLP 159
SAG+ RT ++S +P P N R+ GS ++P + KTL L
Sbjct: 41 SAGRPRTLSTSMEASAAPTIPELKNL-------RRRGSLDEHKQPRKFLVDVDKTLNALL 93
Query: 158 *TSDSDLHCRCLEELNCQRHVNLGQGYLSGFGLQKL 51
+ D+D + + E + V+LG G+ L +L
Sbjct: 94 ESEDTDRNMQITIEDTGPKVVSLGSASSGGYRLYEL 129
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +2
Query: 269 EKEETRSRKRNYSKFSIYLPKHVNAKGITKLRIVW 373
EKE R Y + + KH+N+ G + + W
Sbjct: 276 EKERKRENYEEYKQVDRIVAKHLNSDGSVEYLVKW 310
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 25.4 bits (53), Expect = 7.3
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +2
Query: 140 DQSQKFKGALAEFSSRLYRVAGQSSNFHFVVAPLSIWLY*QHSEKEETRSRKRNYSK 310
DQ+++F +L F + L R +NF PL++ Y + K R +Y K
Sbjct: 672 DQAKQFNTSLENFKNALERAESLLTNFDVPDYPLNV--YDEKDVKRVNSLRGTSYKK 726
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 253 VLAALGEGGDPKSQKELFEVLNLP 324
+L L EG +PKS +L V NLP
Sbjct: 298 ILHLLNEGNEPKSPIQLPPVSNLP 321
>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 250
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 155 FKGALAEFSSRLYRVAGQSSNFH 223
F G ++ FSS Y ++GQ S FH
Sbjct: 55 FCGVMSIFSSLRYCLSGQQSAFH 77
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.0 bits (52), Expect = 9.6
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 438 NKPGXVQVXSHSKTTAYSASSNKEHLTDHENPIEKREI-TPDE 563
N PG V + + AYS SSN ++ + I +EI +PD+
Sbjct: 155 NSPGFVYRPTSIRDRAYSISSNHDNESTLTEGIALKEIESPDK 197
>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 25.0 bits (52), Expect = 9.6
Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = +3
Query: 456 QVXSHSKTTAYSASSNKEHLTDHENPIEKRE---ITPDEGSFGNSFLIRHFGLQRALDHS 626
+ SK + + S+ + + E I++ + I D+ + FG+Q+ L S
Sbjct: 124 ETTEESKQSVSNEVSSPDVAKEQEKLIQRAKRFGIPVDDEQIKKAARAARFGIQQPLASS 183
Query: 627 VSRSHNRKRN 656
+++HN+ +N
Sbjct: 184 NNKNHNQSKN 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,840
Number of Sequences: 5004
Number of extensions: 56603
Number of successful extensions: 170
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -