Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0404
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0509 + 3694689-3695683,3695799-3695946,3696864-3696943,369... 30 1.9
04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925 29 2.5
06_03_0733 + 23976835-23976906,23977076-23977279,23977388-239776... 29 4.3
08_02_1176 + 24931728-24931877,24933175-24933275,24934410-249347... 28 5.7
03_06_0015 - 31036091-31036202,31037839-31037916,31038408-310386... 28 5.7
08_01_0899 - 8862275-8862972,8863252-8863332,8863594-8863819 28 7.5
11_06_0211 + 21305535-21305895,21306512-21306761,21307543-213076... 27 9.9
08_01_1046 - 10608463-10608506,10608892-10609039 27 9.9
07_03_0538 + 19231318-19231382,19231652-19232390,19232468-192325... 27 9.9
>02_01_0509 +
3694689-3695683,3695799-3695946,3696864-3696943,
3697214-3698062,3698193-3698337,3698426-3698677,
3698780-3699089,3699415-3699524
Length = 962
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = -3
Query: 615 EPAVVQSVESGTNSRKIPHLALFLSSQSDFRGLLDVLYWSSHYMQ*FCCVXKLGXI 448
E AV + + +N R+ P+L +LS S +GLL+V + S + C + +G +
Sbjct: 454 EYAVQEVARACSNLREDPNLGTWLSCPSFIQGLLEVTFTSKDDLVLECAILIIGEL 509
>04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925
Length = 962
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +3
Query: 453 VQVXSHSKTTAYSASSNKEHLTDHENPIEKREITPDEGSFGNSFLIRHFGLQR 611
VQ S S S S +LT E ++ EIT S GN F +R+ GL+R
Sbjct: 556 VQTISSSSNMLSSIFSESTYLTVLE--LQDSEITEVPTSIGNLFNLRYIGLRR 606
>06_03_0733 +
23976835-23976906,23977076-23977279,23977388-23977645,
23978002-23978217,23978324-23978479,23978556-23978867,
23978957-23979044,23979224-23979372,23979465-23979755
Length = 581
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 287 FGSPPSPSAANTAR*IMGPRQNG 219
FGS PSP+ ++R GPR NG
Sbjct: 502 FGSKPSPARPQSSRKAPGPRANG 524
>08_02_1176 +
24931728-24931877,24933175-24933275,24934410-24934788,
24935509-24936354,24936555-24936642,24936947-24937039,
24937221-24937318,24937364-24937470,24938266-24938353,
24938748-24939005
Length = 735
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +3
Query: 441 KPGXVQVXSHSKTTAYSASSNKEHLTDHENP-----IEKREITP 557
+PG + V S SKT ++N +++E P +EK +ITP
Sbjct: 436 QPGSLSVISMSKTVVVPVNANNLEPSNYETPKDVHVVEKTDITP 479
>03_06_0015 -
31036091-31036202,31037839-31037916,31038408-31038655,
31038744-31038792,31038919-31039890,31040059-31040894
Length = 764
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 207 RAATSILSW-PHYLSGCISSTRRRRRPEV 290
+ ATS+LSW +SGC S T R+PE+
Sbjct: 580 KRATSLLSWHAQVMSGC-SKTHHTRKPEL 607
>08_01_0899 - 8862275-8862972,8863252-8863332,8863594-8863819
Length = 334
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = +3
Query: 360 CE*SGHAGN*RPFXHDTRLDFG*QSNN-KPGXVQVXSHSKTTAYSASS--NKEHLTDHEN 530
C +GH+GN RP + + G +N +P V + SS N + +T
Sbjct: 44 CGGTGHSGNDRPETREEAMYMGNNNNGYRPQGVPANESGRIPGQPDSSIENFKAITTRGG 103
Query: 531 PIEKREITPDEG 566
+K+E P+ G
Sbjct: 104 HTQKQETAPNNG 115
>11_06_0211 +
21305535-21305895,21306512-21306761,21307543-21307652,
21308836-21309067,21310233-21310603,21311434-21311507,
21311727-21311880,21312251-21312434,21313066-21313291,
21313704-21314135,21314399-21314456,21314748-21314829,
21315350-21315421,21316594-21316737,21317379-21317457,
21318023-21318105,21318198-21318252,21318488-21318778
Length = 1085
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +3
Query: 447 GXVQVXSHSKTTAYSASSNKEHLTDHENPIEKREITPDEGSFGNSFLIRHFGLQRALDHS 626
G + SH+ + +S+ S ++D ++KR D GS+G +L H+ +D
Sbjct: 553 GLLDSVSHNGSKPHSSHSFGYKISDFRYKLKKRF---DRGSYGEVWLAFHWNCSEDVDVH 609
Query: 627 VSRSH 641
SH
Sbjct: 610 KDHSH 614
>08_01_1046 - 10608463-10608506,10608892-10609039
Length = 63
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 129 SAMKIRVRSSREPSQSFHRVCTGSPVRAATSILSWP 236
SAM+ R RS + S S H++ +G+ + AAT + S P
Sbjct: 28 SAMEERWRSLAKSSNSGHQIRSGTGLLAATRMRSTP 63
>07_03_0538 +
19231318-19231382,19231652-19232390,19232468-19232516,
19232600-19232664,19232774-19232828,19234107-19234225,
19234346-19234412,19235316-19235437,19235521-19235790
Length = 516
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 286 KSQKELFEVLNLPAEACKRERYYQIANSLATPGTD 390
K++K LF+ + +ACK+ R I++ GTD
Sbjct: 42 KTKKYLFKPNTMTTQACKKRRAVYISSESEDSGTD 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,624,539
Number of Sequences: 37544
Number of extensions: 392321
Number of successful extensions: 1133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -