Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0404
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54431| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.15 
SB_14215| Best HMM Match : ZF-HD_dimer (HMM E-Value=1.5)               28   5.8  
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                28   7.7  
SB_26814| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   7.7  
SB_12424| Best HMM Match : LEH (HMM E-Value=9.7)                       28   7.7  
SB_49137| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_54431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1023

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +3

Query: 150 RSSREPSQSFHRVCTGSPVRAATSILSWPHYLSGC---ISSTRRRRRPEVAKGTIRSSQ 317
           RS R+P QS H VCTG PV         P   SGC    SS++  R P +    I + Q
Sbjct: 256 RSRRKPRQSRH-VCTGLPVVTTVDSTGPPQLSSGCSTNSSSSQTARFPVIPDTIIANMQ 313


>SB_14215| Best HMM Match : ZF-HD_dimer (HMM E-Value=1.5)
          Length = 738

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +1

Query: 349 YYQIANSLATPGTDVHXTTTRALILDNNLIINPDXSKFXHTAK 477
           YY  A   +  G  +   TT   I DN LI+NPD     H A+
Sbjct: 472 YYLFAADGSAHGLSIKLRTTLKRIADN-LILNPDADPSLHAAE 513


>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -3

Query: 636  FWKRCGPEPAVVQSVESGTNSRKIPHLALFLSSQSDFRGLLDVLYWS 496
            FW   G  P V+ S   GT+ R +    L   +        DVLYW+
Sbjct: 3599 FWTDGGYRPKVMSSALDGTDPRSLVTSELISPAGLAIDHASDVLYWA 3645


>SB_26814| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 594

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 204 VRAATSILSWPHYLSGCIS 260
           V AATS + W HYL+ C++
Sbjct: 270 VPAATSAVKWLHYLNSCLN 288


>SB_12424| Best HMM Match : LEH (HMM E-Value=9.7)
          Length = 173

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 212 SNFHFVVAPLSIWLY*QHSEKEETRSRKRNYSKFSIYLPKHVNAK 346
           S+ H +  PLS+WL    S +     R+R +  F  Y P +  +K
Sbjct: 24  SSIHSLAQPLSVWLVFIKSSRSSRSRRRRLFESFE-YSPFNSTSK 67


>SB_49137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 260 QHSEKEETRSRKRNYSK--FSIYLPKHVNAKGITKLRIVWP 376
           +H++ E  + RK+   K   S++LPK  +   ITK  IV P
Sbjct: 149 EHAKDEADKQRKKEARKGVHSMWLPKRKDTLPITKATIVQP 189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,235,068
Number of Sequences: 59808
Number of extensions: 440066
Number of successful extensions: 1251
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)