Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0404
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81533-5|CAB04337.1|  342|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z81099-1|CAB03187.1|  600|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z82265-6|CAB05170.2|  537|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in ge...    29   3.8  
AC090999-25|AAK26157.2|  921|Caenorhabditis elegans Hypothetical...    28   5.1  
Z81051-7|CAB02868.1|  167|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>Z81533-5|CAB04337.1|  342|Caenorhabditis elegans Hypothetical
           protein F36G9.8 protein.
          Length = 342

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -3

Query: 606 VVQSVESGTNSRKIPHLALFLSSQSDFRGLLDVLYWSSHYMQ*FCCVXK 460
           VV  + +  NS+    ++L   S   F G L +LY++ HY Q  C + +
Sbjct: 266 VVPLIFTIPNSQTSYFISLLCMSTHTFLGTLSMLYFNRHYRQWLCSIIR 314


>Z81099-1|CAB03187.1|  600|Caenorhabditis elegans Hypothetical
           protein K08F9.2 protein.
          Length = 600

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 594 VESGTNSRKIPHLALFLSSQSDFRGLLDVLYW 499
           + SGT+SRK PH  +   +Q+   G L  + W
Sbjct: 351 ISSGTSSRKSPHTTMITGAQTSSNGDLFTVGW 382


>Z82265-6|CAB05170.2|  537|Caenorhabditis elegans Hypothetical
           protein F02H6.1 protein.
          Length = 537

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 316 NLPAEACKRERYYQIANSLATPGTDVHXTTTRALI 420
           N+P E   R  + Q+AN L +P  DV     R LI
Sbjct: 357 NIPIERQYRTEFIQLANDLQSPPDDVRLDVFRRLI 391


>U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in germ
           line developmentprotein 3, isoform a protein.
          Length = 977

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 453 VQVXSHSKTTAYSASSNKEHLTDHENPIEKREITPDEGSFGNSFLIRHFGLQRALDH-SV 629
           +Q+  H K  +     + E L  HE+P    + T     FGN  +   F +QR L + ++
Sbjct: 749 LQMTHHLKLKSNDVDLDHEKLYMHESPHNDSDTTVSASGFGNDLMDGDF-VQRFLSNANI 807

Query: 630 SRSHNRKR 653
           + S  R R
Sbjct: 808 NESGRRPR 815


>AC090999-25|AAK26157.2|  921|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.18 protein.
          Length = 921

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 305 SKFSIYLPKHVNAKGITKLRIV 370
           S FS+ L KH+N K +T +R+V
Sbjct: 71  SSFSMKLRKHINQKRLTSIRVV 92


>Z81051-7|CAB02868.1|  167|Caenorhabditis elegans Hypothetical
           protein C55A6.8 protein.
          Length = 167

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 189 CTGSPVRAATSILSWP-HYLSGCISSTRRRRRPEV 290
           C  +PV + T I  WP HY+  CI   R  + P +
Sbjct: 3   CYLNPVLSYTKIWGWPYHYVEHCIFDLRIIKDPRI 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,595,063
Number of Sequences: 27780
Number of extensions: 329163
Number of successful extensions: 922
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)