Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0404
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   3.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   4.5  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   5.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 618 PEPAVVQSVESGTNSRKIPHLAL 550
           P P   Q+V   TNS+ IP + +
Sbjct: 765 PPPPSAQNVPQNTNSQAIPRIPI 787


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 606 QRALDHSVSRSHNRK 650
           +RAL+H++ R HN K
Sbjct: 203 RRALEHTLDRFHNDK 217


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/14 (57%), Positives = 11/14 (78%), Gaps = 1/14 (7%)
 Frame = +2

Query: 95  SH-VFGNLIPPNIC 133
           SH + GNL+PP +C
Sbjct: 358 SHPLHGNLLPPGVC 371


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 13/54 (24%), Positives = 24/54 (44%)
 Frame = +1

Query: 265 LGEGGDPKSQKELFEVLNLPAEACKRERYYQIANSLATPGTDVHXTTTRALILD 426
           LG GG     K L++   + A+  + E+Y  + NS        H    + L+++
Sbjct: 73  LGSGGFGIVYKALYKGEQVAAKIIQTEKYSNMLNSEKHASFLKHSNIVKVLMIE 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,079
Number of Sequences: 438
Number of extensions: 3740
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)