Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0404
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54310.1 68416.m06002 hypothetical protein predicted protein,...    29   2.7  
At3g16570.1 68416.m02119 rapid alkalinization factor (RALF) fami...    28   4.8  
At4g24805.1 68417.m03553 expressed protein                             28   6.3  
At2g37520.1 68415.m04601 PHD finger family protein contains Pfam...    28   6.3  
At4g35540.1 68417.m05051 expressed protein transcription factor ...    27   8.3  

>At3g54310.1 68416.m06002 hypothetical protein predicted protein,
           Arabidopsis thaliana
          Length = 358

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 149 DSDLHCRCLEELNCQRHVNL 90
           D  + C+C+ ELN  RH+NL
Sbjct: 195 DVTISCKCMAELNALRHLNL 214


>At3g16570.1 68416.m02119 rapid alkalinization factor (RALF) family
           protein similar to RALF precursor [Nicotiana tabacum]
           GI:16566316
          Length = 138

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 226 CRGPIIYLAVLAALGEGGD 282
           CRG I   +V AALG+GGD
Sbjct: 47  CRGTIAECSVSAALGDGGD 65


>At4g24805.1 68417.m03553 expressed protein
          Length = 247

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +2

Query: 275 EETRSRKRNYSKFSIYLPKHVNAKGITKLRIVWPRRE 385
           E  R R   YS +  Y+   +N     KLR VW  R+
Sbjct: 49  EGIRIRHHGYSSYEAYIKHQLNKTQNPKLRKVWTTRD 85


>At2g37520.1 68415.m04601 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 854

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/33 (33%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = +2

Query: 305 SKFSIYLPKHVNAKGITKL--RIVWPRRELTSI 397
           S+F + +PKH+++ GITK+  ++  P++E   +
Sbjct: 115 SRFVLEIPKHLSSTGITKITFKLSKPKKEFDDL 147


>At4g35540.1 68417.m05051 expressed protein transcription factor
           IIIB chain BRF1, Saccharomycescerevisiae, PIR2:A44072
          Length = 527

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 234 PHYLSGCISSTRRRRRPEVAKGTIRSSQ 317
           P Y+ GC++  RRR + + AK  I + Q
Sbjct: 433 PSYIKGCVAVERRREKIKAAKLRINAIQ 460


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,856,778
Number of Sequences: 28952
Number of extensions: 308803
Number of successful extensions: 919
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)