Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0403
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy...    98   1e-21
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar...    56   3e-09
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    33   0.044
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    27   1.7  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    26   3.8  
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   6.7  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   8.9  

>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 180

 Score = 97.9 bits (233), Expect = 1e-21
 Identities = 43/48 (89%), Positives = 45/48 (93%)
 Frame = +1

Query: 1   NAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 144
           NAMNAAEITDKLGLHSLR+R WYIQATCATSGDGLYEGL+WLS  LKN
Sbjct: 132 NAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKN 179


>SPBC1539.08 |||ADP-ribosylation factor, Arf
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 56.4 bits (130), Expect = 3e-09
 Identities = 25/46 (54%), Positives = 32/46 (69%)
 Frame = +1

Query: 4   AMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 141
           A++ A+ITD L L  L++R W +Q TCA +GDGL EGL WLS   K
Sbjct: 137 ALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAK 182


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 32.7 bits (71), Expect = 0.044
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = +1

Query: 4   AMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 141
           A+++ EI+  L +   ++ +W I +  A +G  + + + WL+N LK
Sbjct: 132 ALSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLANDLK 177


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 347 LKYCFSKYYINYVYLNAINGMQINSVQ 427
           L YC   Y+INY+  ++IN   ++ +Q
Sbjct: 33  LSYCCVSYFINYLDRSSINNAYLSGMQ 59


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = -1

Query: 319 VRNECGALRSPDDASVIHL*FRHNTLYLIANKVNIS*TIVSFNYQICLRVGXHTXSGWRS 140
           V  E  +L   DD  +++L +   + Y ++   N    +V  +Y+I   +  +  S   S
Sbjct: 109 VHEELSSLLQRDDIQLLNLDYVDLSEYFVSCPENAIYLVVLPSYEIESSIDYYLSSLQES 168

Query: 139 *ADWRASRDP 110
            +D+R  +DP
Sbjct: 169 FSDFRVPKDP 178


>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 127

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 113 PSYSPSPEVAHVAWMYQL 60
           P+ SP PEV+H  W+  L
Sbjct: 16  PNSSPDPEVSHKLWVSSL 33


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 94  GDGLYEGLDWLSNQLKNAN 150
           GD   E +DWL + L+++N
Sbjct: 587 GDNTSENIDWLKHSLRDSN 605


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,776
Number of Sequences: 5004
Number of extensions: 49625
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)