BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0403 (625 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 98 1e-21 SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 56 3e-09 SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 33 0.044 SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 27 1.7 SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 26 3.8 SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 25 6.7 SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 25 8.9 >SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces pombe|chr 2|||Manual Length = 180 Score = 97.9 bits (233), Expect = 1e-21 Identities = 43/48 (89%), Positives = 45/48 (93%) Frame = +1 Query: 1 NAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 144 NAMNAAEITDKLGLHSLR+R WYIQATCATSGDGLYEGL+WLS LKN Sbjct: 132 NAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKN 179 >SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosaccharomyces pombe|chr 2|||Manual Length = 184 Score = 56.4 bits (130), Expect = 3e-09 Identities = 25/46 (54%), Positives = 32/46 (69%) Frame = +1 Query: 4 AMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 141 A++ A+ITD L L L++R W +Q TCA +GDGL EGL WLS K Sbjct: 137 ALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAK 182 >SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosaccharomyces pombe|chr 1|||Manual Length = 186 Score = 32.7 bits (71), Expect = 0.044 Identities = 13/46 (28%), Positives = 27/46 (58%) Frame = +1 Query: 4 AMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 141 A+++ EI+ L + ++ +W I + A +G + + + WL+N LK Sbjct: 132 ALSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLANDLK 177 >SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 514 Score = 27.5 bits (58), Expect = 1.7 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = +2 Query: 347 LKYCFSKYYINYVYLNAINGMQINSVQ 427 L YC Y+INY+ ++IN ++ +Q Sbjct: 33 LSYCCVSYFINYLDRSSINNAYLSGMQ 59 >SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccharomyces pombe|chr 3|||Manual Length = 688 Score = 26.2 bits (55), Expect = 3.8 Identities = 17/70 (24%), Positives = 33/70 (47%) Frame = -1 Query: 319 VRNECGALRSPDDASVIHL*FRHNTLYLIANKVNIS*TIVSFNYQICLRVGXHTXSGWRS 140 V E +L DD +++L + + Y ++ N +V +Y+I + + S S Sbjct: 109 VHEELSSLLQRDDIQLLNLDYVDLSEYFVSCPENAIYLVVLPSYEIESSIDYYLSSLQES 168 Query: 139 *ADWRASRDP 110 +D+R +DP Sbjct: 169 FSDFRVPKDP 178 >SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual Length = 127 Score = 25.4 bits (53), Expect = 6.7 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = -3 Query: 113 PSYSPSPEVAHVAWMYQL 60 P+ SP PEV+H W+ L Sbjct: 16 PNSSPDPEVSHKLWVSSL 33 >SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces pombe|chr 1|||Manual Length = 670 Score = 25.0 bits (52), Expect = 8.9 Identities = 8/19 (42%), Positives = 13/19 (68%) Frame = +1 Query: 94 GDGLYEGLDWLSNQLKNAN 150 GD E +DWL + L+++N Sbjct: 587 GDNTSENIDWLKHSLRDSN 605 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,517,776 Number of Sequences: 5004 Number of extensions: 49625 Number of successful extensions: 118 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 115 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 118 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 275671126 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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