Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0403
(625 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56255| Best HMM Match : Arf (HMM E-Value=0) 101 5e-22
SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.) 80 1e-15
SB_11310| Best HMM Match : Arf (HMM E-Value=0) 73 3e-13
SB_53421| Best HMM Match : Arf (HMM E-Value=0) 68 5e-12
SB_37042| Best HMM Match : Arf (HMM E-Value=0) 50 1e-06
SB_32972| Best HMM Match : Arf (HMM E-Value=2.66247e-44) 44 1e-04
SB_57342| Best HMM Match : Arf (HMM E-Value=0) 42 5e-04
SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_18358| Best HMM Match : Arf (HMM E-Value=0) 39 0.004
SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13) 39 0.004
SB_19345| Best HMM Match : Arf (HMM E-Value=3.3e-05) 38 0.005
SB_20828| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_16703| Best HMM Match : RVT_1 (HMM E-Value=0.41) 27 9.4
>SB_56255| Best HMM Match : Arf (HMM E-Value=0)
Length = 181
Score = 101 bits (242), Expect = 5e-22
Identities = 45/48 (93%), Positives = 46/48 (95%)
Frame = +1
Query: 1 NAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 144
NAMNAAEITDKLGLHSLRNR WYIQATCATSGDGLYEGLDWLSN LK+
Sbjct: 132 NAMNAAEITDKLGLHSLRNRQWYIQATCATSGDGLYEGLDWLSNTLKS 179
>SB_42281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 80.2 bits (189), Expect = 1e-15
Identities = 33/46 (71%), Positives = 40/46 (86%)
Frame = +1
Query: 1 NAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQL 138
NA++ +EIT+KLGL S+R+R WYIQA CAT G GLYEGLDWLSN+L
Sbjct: 132 NALSVSEITEKLGLQSIRDRQWYIQAACATQGTGLYEGLDWLSNEL 177
>SB_11310| Best HMM Match : Arf (HMM E-Value=0)
Length = 255
Score = 72.5 bits (170), Expect = 3e-13
Identities = 27/47 (57%), Positives = 40/47 (85%)
Frame = +1
Query: 1 NAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 141
++M+ E+++KL LH+LR+RNWYIQATCA G G+YEGL+WL+ Q++
Sbjct: 205 DSMSTTELSEKLSLHTLRSRNWYIQATCALKGQGVYEGLEWLAQQIQ 251
>SB_53421| Best HMM Match : Arf (HMM E-Value=0)
Length = 625
Score = 68.1 bits (159), Expect = 5e-12
Identities = 25/48 (52%), Positives = 38/48 (79%)
Frame = +1
Query: 1 NAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 144
NAM A+EI +KL L+ +R R W++Q+ CA G+GL+EGLDW++ Q++N
Sbjct: 111 NAMTASEIREKLKLNEIRGRPWFVQSACAVKGEGLFEGLDWMATQIRN 158
>SB_37042| Best HMM Match : Arf (HMM E-Value=0)
Length = 188
Score = 50.4 bits (115), Expect = 1e-06
Identities = 20/51 (39%), Positives = 32/51 (62%)
Frame = +1
Query: 1 NAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKNANR 153
NA+ A E+ LGL + W++Q CAT+GDGLYE +D + +K+ ++
Sbjct: 135 NALKAGEMAKHLGLLQHKRNPWHVQEACATNGDGLYEAMDHMVRMVKDFHK 185
>SB_32972| Best HMM Match : Arf (HMM E-Value=2.66247e-44)
Length = 257
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/40 (42%), Positives = 29/40 (72%)
Frame = +1
Query: 4 AMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDW 123
AM+++E+++ LGL +L++R W I T A G+GL E ++W
Sbjct: 218 AMSSSEVSNALGLSALKSRTWAIFKTSAVKGEGLDEAMEW 257
>SB_57342| Best HMM Match : Arf (HMM E-Value=0)
Length = 457
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +1
Query: 4 AMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLS 129
A+ ++ ++L L+ W IQ TCAT+GDGLYE ++ L+
Sbjct: 226 AIGPDKMAEELSLYKHTKNPWRIQGTCATAGDGLYEAMEALA 267
>SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1325
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +1
Query: 1 NAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGL 105
NA AEI+ LGL+++R+R W IQ A +G+G+
Sbjct: 116 NAATPAEISSNLGLNTIRSRGWQIQGCSALTGEGV 150
>SB_18358| Best HMM Match : Arf (HMM E-Value=0)
Length = 214
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 1 NAMNAAEITDKLGLHSLRNRN-WYIQATCATSGDGLYEGLDWLSNQL 138
NA+ EIT L LH L R+ W++Q A G+GL +GL LS +
Sbjct: 137 NAIPPREITHMLSLHDLNARHLWFVQPCSALLGEGLLDGLRALSEMI 183
>SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)
Length = 334
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 1 NAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 132
N + A +I + LGL L+ ++Q A++GDGL E WL N
Sbjct: 85 NVLKAGDIAEHLGLLKLKRNPLHVQEAFASNGDGLCEAHKWLPN 128
>SB_19345| Best HMM Match : Arf (HMM E-Value=3.3e-05)
Length = 222
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 7 MNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQL 138
++ +TD L ++ L NR W + C + DGL EG+ WL Q+
Sbjct: 179 LSCVRVTDMLQMNKL-NRPWQVNMMCVENLDGLLEGMTWLLKQV 221
>SB_20828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 354
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 522 PNFTHIFCSTSSRIEHAPHDHIMDPNATKYKHCTE 418
P+ TH+ ST SR+ + H P++T+ C+E
Sbjct: 144 PSHTHVPSSTESRVPSSVLSHTRVPSSTESHSCSE 178
>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2537
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = -2
Query: 222 LTYLKP*SLSIIRFVCELAXIXLAVGVLELIGEP-VETLVQSVSGSGACRLDVPVTVAQR 46
L+YL P +LS++ F C + +A E P + +L+Q ++ +LD P + ++
Sbjct: 2209 LSYLSPANLSVL-FDCLMESHTVAY---EFNARPGLRSLIQKLA-----KLDAPANLLRQ 2259
Query: 45 MQTQFVCYL 19
T F CYL
Sbjct: 2260 STTAFTCYL 2268
>SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 864
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 77 RHAPLPETDCTR--VSTGSPISSRTPTAXXMXANSQTNLIIERDYGLRYVN 223
+ +P+ ET+ R VS SP+S +P + + L YG +Y N
Sbjct: 606 QRSPIRETEAQRSPVSQRSPVSQNSPVPQRSPTSKHSPLSQRHSYGSQYSN 656
>SB_16703| Best HMM Match : RVT_1 (HMM E-Value=0.41)
Length = 523
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/65 (24%), Positives = 24/65 (36%)
Frame = +2
Query: 38 VCIRCATVTGTSKRHAPLPETDCTRVSTGSPISSRTPTAXXMXANSQTNLIIERDYGLRY 217
VC ++ +KR P+P TD +R P+ N Q +GLR
Sbjct: 251 VCDANHSMLSCAKRRFPIPNTDLSRAFRQIPVDPADYHNLGFQINDQFYFHTSFPFGLRT 310
Query: 218 VNFIC 232
+ C
Sbjct: 311 ASLAC 315
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,339,972
Number of Sequences: 59808
Number of extensions: 388972
Number of successful extensions: 821
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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