Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0403
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   5.6  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   5.6  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   7.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.8  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 516 SWGITYNFVFF 548
           SW IT+NF +F
Sbjct: 209 SWRITHNFFYF 219


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 353 YCFSKYYINYVYLNAING 406
           YCF++ +    + NAI+G
Sbjct: 8   YCFARLFFIIGFFNAISG 25


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 336 VPYCIWFGTNAARFGHQ 286
           + +CI FG  A +FG Q
Sbjct: 244 IVFCITFGLVAGQFGAQ 260


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -2

Query: 477 HAPHDHIMDPNATKYKH 427
           H P DHI  P+   Y +
Sbjct: 104 HVPSDHIWRPDIVLYNN 120


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -2

Query: 477 HAPHDHIMDPNATKYKH 427
           H P DHI  P+   Y +
Sbjct: 104 HVPSDHIWRPDIVLYNN 120


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -2

Query: 477 HAPHDHIMDPNATKYKH 427
           H P DHI  P+   Y +
Sbjct: 100 HVPSDHIWRPDIVLYNN 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,121
Number of Sequences: 438
Number of extensions: 3308
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)