Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0403
(625 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62290.1 68416.m06998 ADP-ribosylation factor identical to GP... 96 2e-20
At5g14670.1 68418.m01719 ADP-ribosylation factor, putative simil... 94 8e-20
At2g47170.1 68415.m05890 ADP-ribosylation factor 1 (ARF1) identi... 94 8e-20
At1g70490.3 68414.m08112 ADP-ribosylation factor, putative nearl... 94 8e-20
At1g70490.2 68414.m08111 ADP-ribosylation factor, putative nearl... 94 8e-20
At1g70490.1 68414.m08110 ADP-ribosylation factor, putative nearl... 94 8e-20
At1g23490.1 68414.m02948 ADP-ribosylation factor identical to SP... 94 8e-20
At1g10630.1 68414.m01205 ADP-ribosylation factor, putative simil... 94 8e-20
At5g17060.1 68418.m01999 ADP-ribosylation factor, putative simil... 69 2e-12
At3g03120.1 68416.m00308 ADP-ribosylation factor, putative simil... 68 6e-12
At3g22950.1 68416.m02893 ADP-ribosylation factor, putative simil... 67 1e-11
At2g15310.1 68415.m01746 ADP-ribosylation factor, putative simil... 66 2e-11
At1g02440.1 68414.m00192 ADP-ribosylation factor, putative simil... 64 5e-11
At1g02430.1 68414.m00190 ADP-ribosylation factor, putative simil... 64 5e-11
At2g24765.1 68415.m02959 ADP-ribosylation factor 3 (ARF3) identi... 62 2e-10
At2g18390.1 68415.m02142 ADP-ribosylation factor-like protein 2 ... 36 0.017
At5g35450.1 68418.m04215 disease resistance protein (CC-NBS-LRR ... 29 1.9
At5g67560.1 68418.m08519 ADP-ribosylation factor, putative ident... 28 5.8
At5g48620.1 68418.m06013 disease resistance protein (CC-NBS-LRR ... 27 7.7
At5g43470.2 68418.m05315 disease resistance protein (CC-NBS-LRR ... 27 7.7
At5g43470.1 68418.m05314 disease resistance protein (CC-NBS-LRR ... 27 7.7
>At3g62290.1 68416.m06998 ADP-ribosylation factor identical to
GP:166586 ADP-ribosylation factor {Arabidopsis
thaliana}; ADP-ribosylation factor 1 - Arabidopsis
thaliana, PIR:S28875
Length = 181
Score = 95.9 bits (228), Expect = 2e-20
Identities = 41/48 (85%), Positives = 45/48 (93%)
Frame = +1
Query: 1 NAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 144
NAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN + N
Sbjct: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179
>At5g14670.1 68418.m01719 ADP-ribosylation factor, putative similar
to ADP-ribosylation factor DcARF1 (GI:965483) [Daucus
carota].
Length = 188
Score = 93.9 bits (223), Expect = 8e-20
Identities = 40/46 (86%), Positives = 44/46 (95%)
Frame = +1
Query: 1 NAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQL 138
NAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN +
Sbjct: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
>At2g47170.1 68415.m05890 ADP-ribosylation factor 1 (ARF1) identical
to ADP-ribosylation factor ARF1({Arabidopsis thaliana}
(SP:P36397) (GP:166586)
Length = 181
Score = 93.9 bits (223), Expect = 8e-20
Identities = 40/46 (86%), Positives = 44/46 (95%)
Frame = +1
Query: 1 NAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQL 138
NAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN +
Sbjct: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
>At1g70490.3 68414.m08112 ADP-ribosylation factor, putative nearly
identical to ADP-ribosylation factor 1 GB:P36397
[Arabidopsis thaliana], ADP-ribosylation factor
GI:166586 [Arabidopsis thaliana]
Length = 181
Score = 93.9 bits (223), Expect = 8e-20
Identities = 40/46 (86%), Positives = 44/46 (95%)
Frame = +1
Query: 1 NAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQL 138
NAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN +
Sbjct: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
>At1g70490.2 68414.m08111 ADP-ribosylation factor, putative nearly
identical to ADP-ribosylation factor 1 GB:P36397
[Arabidopsis thaliana], ADP-ribosylation factor
GI:166586 [Arabidopsis thaliana]
Length = 181
Score = 93.9 bits (223), Expect = 8e-20
Identities = 40/46 (86%), Positives = 44/46 (95%)
Frame = +1
Query: 1 NAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQL 138
NAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN +
Sbjct: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
>At1g70490.1 68414.m08110 ADP-ribosylation factor, putative nearly
identical to ADP-ribosylation factor 1 GB:P36397
[Arabidopsis thaliana], ADP-ribosylation factor
GI:166586 [Arabidopsis thaliana]
Length = 181
Score = 93.9 bits (223), Expect = 8e-20
Identities = 40/46 (86%), Positives = 44/46 (95%)
Frame = +1
Query: 1 NAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQL 138
NAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN +
Sbjct: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
>At1g23490.1 68414.m02948 ADP-ribosylation factor identical to
SP:Q9SRC3 ADP-ribosylation factor 1-like [Arabidopsis
thaliana], ADP-ribosylation factor GI:166586
[Arabidopsis thaliana]
Length = 181
Score = 93.9 bits (223), Expect = 8e-20
Identities = 40/46 (86%), Positives = 44/46 (95%)
Frame = +1
Query: 1 NAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQL 138
NAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN +
Sbjct: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
>At1g10630.1 68414.m01205 ADP-ribosylation factor, putative similar
to ADP-ribosylation factor GI:166586 from [Arabidopsis
thaliana]
Length = 181
Score = 93.9 bits (223), Expect = 8e-20
Identities = 40/46 (86%), Positives = 44/46 (95%)
Frame = +1
Query: 1 NAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQL 138
NAMNAAEITDKLGLHSLR R+WYIQ+TCATSG+GLYEGLDWLSN +
Sbjct: 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177
>At5g17060.1 68418.m01999 ADP-ribosylation factor, putative similar
to ADP-ribosylation factor 1; ARF 1 (GP:385340)
{Drosophila melanogaster)
Length = 192
Score = 69.3 bits (162), Expect = 2e-12
Identities = 29/47 (61%), Positives = 36/47 (76%)
Frame = +1
Query: 4 AMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 144
AM+ E+ + LGL L+NR W+IQ TCA GDGLYEGLDWLS+ LK+
Sbjct: 133 AMSPREVCEGLGLFDLKNRKWHIQGTCALRGDGLYEGLDWLSSTLKD 179
>At3g03120.1 68416.m00308 ADP-ribosylation factor, putative similar
to ADP-ribosylation factor 1; ARF 1 (GP:385340)
{Drosophila melanogaster}
Length = 192
Score = 67.7 bits (158), Expect = 6e-12
Identities = 30/53 (56%), Positives = 35/53 (66%)
Frame = +1
Query: 4 AMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKNANR*XY 162
AM+ E+ + LGL L+NR W+IQ TCA GDGLYEGLDWLS LK Y
Sbjct: 133 AMSPREVCEGLGLLDLKNRKWHIQGTCALQGDGLYEGLDWLSATLKEVKAAGY 185
>At3g22950.1 68416.m02893 ADP-ribosylation factor, putative similar
to ADP-ribosylation factor GB:P91924 [Dugesia japonica]
Length = 183
Score = 66.9 bits (156), Expect = 1e-11
Identities = 25/46 (54%), Positives = 38/46 (82%)
Frame = +1
Query: 1 NAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQL 138
+AM AEITD L LHS++N +W+IQA+CA +G+GLY+GL W++ ++
Sbjct: 132 DAMTPAEITDALNLHSIKNHDWHIQASCAVTGEGLYDGLGWIAQKV 177
>At2g15310.1 68415.m01746 ADP-ribosylation factor, putative similar
to ADP-ribosylation factor (GI:861205) [Chlamydomonas
reinhardtii]
Length = 205
Score = 66.1 bits (154), Expect = 2e-11
Identities = 29/48 (60%), Positives = 34/48 (70%)
Frame = +1
Query: 1 NAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 144
NA+ AE+ +KLGLHSL R W IQ T A SG GLYEGL+WLS + N
Sbjct: 132 NALPVAEVANKLGLHSLSKRCWLIQGTSAISGQGLYEGLEWLSTTIPN 179
>At1g02440.1 68414.m00192 ADP-ribosylation factor, putative similar
to ADP-ribosylation factor GB:AAA32729 GI:166586 from
(Arabidopsis thaliana)
Length = 190
Score = 64.5 bits (150), Expect = 5e-11
Identities = 33/54 (61%), Positives = 42/54 (77%), Gaps = 4/54 (7%)
Frame = +1
Query: 4 AMNAAEITDKLGLHSLRN----RNWYIQATCATSGDGLYEGLDWLSNQLKNANR 153
AM+A+EI++KL L SLR RNW++Q++CA SGDGL+EGLDWL LKNA R
Sbjct: 139 AMSASEISNKLDLTSLRKKNWQRNWHVQSSCAFSGDGLHEGLDWL---LKNAER 189
>At1g02430.1 68414.m00190 ADP-ribosylation factor, putative similar
to ADP-ribosylation factor GI:166586 from [Arabidopsis
thaliana]
Length = 157
Score = 64.5 bits (150), Expect = 5e-11
Identities = 33/54 (61%), Positives = 42/54 (77%), Gaps = 4/54 (7%)
Frame = +1
Query: 4 AMNAAEITDKLGLHSLRN----RNWYIQATCATSGDGLYEGLDWLSNQLKNANR 153
AM+A+EI++KL L SLR RNW++Q++CA SGDGL+EGLDWL LKNA R
Sbjct: 106 AMSASEISNKLDLTSLRQKNWQRNWHVQSSCAFSGDGLHEGLDWL---LKNAER 156
>At2g24765.1 68415.m02959 ADP-ribosylation factor 3 (ARF3) identical
to GP:453191 ADP-ribosylation factor 3 {Arabidopsis
thaliana}; contains domain PF00025: ADP-ribosylation
factor family
Length = 182
Score = 62.5 bits (145), Expect = 2e-10
Identities = 25/49 (51%), Positives = 36/49 (73%)
Frame = +1
Query: 4 AMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKNAN 150
A++ A +T+ L LH +++R W I TCA G+GL+EGLDWLSN LK+ +
Sbjct: 133 ALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTLKSGS 181
>At2g18390.1 68415.m02142 ADP-ribosylation factor-like protein 2
(ARL2) identical to ARL2 G-protein (Halimasch; HAL;
TITAN5) GI:20514265 from [Arabidopsis thaliana];
identical to cDNA ARL2 G-protein mRNA GI:20514264;
contains Pfam profile PF00025: ADP-ribosylation factor
family; contains TIGRfam profile TIGR00231: small
GTP-binding protein domain
Length = 185
Score = 36.3 bits (80), Expect = 0.017
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 4 AMNAAEITDKLGLHSL-RNRNWYIQATCATSGDGLYEGLDWL 126
A+ EI L L S+ ++R+W I A +G+GL EG DWL
Sbjct: 132 ALTPDEIGKVLNLESMDKSRHWKIVGCSAYTGEGLLEGFDWL 173
>At5g35450.1 68418.m04215 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 901
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 100 RLRKWRMSLGCTSYGCAANADPVCLLSRLRSL 5
R R W+M L + G +ADP CL R R L
Sbjct: 288 RKRGWKMLLTSRNEGVGLHADPTCLSFRARIL 319
>At5g67560.1 68418.m08519 ADP-ribosylation factor, putative
identical to GP:15450888 ADP-ribosylation factor-like
protein {Arabidopsis thaliana]
Length = 184
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 4 AMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKNAN 150
A++ +TD++GL SL +R + + + +DWL K++N
Sbjct: 136 ALSKEALTDEMGLKSLTDREVCCFMISCKNSTNIDQVIDWLVKHSKSSN 184
>At5g48620.1 68418.m06013 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 908
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 100 RLRKWRMSLGCTSYGCAANADPVCLLSR 17
R R W+M L + G +ADP CL R
Sbjct: 290 RKRGWKMLLTSRNEGVGIHADPTCLTFR 317
>At5g43470.2 68418.m05315 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein. Closest
Col-0 homolog to RPP8
Length = 908
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 100 RLRKWRMSLGCTSYGCAANADPVCLLSR 17
R R W+M L + G +ADP CL R
Sbjct: 290 RKRGWKMLLTSRNEGVGIHADPTCLTFR 317
>At5g43470.1 68418.m05314 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein. Closest
Col-0 homolog to RPP8
Length = 908
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 100 RLRKWRMSLGCTSYGCAANADPVCLLSR 17
R R W+M L + G +ADP CL R
Sbjct: 290 RKRGWKMLLTSRNEGVGIHADPTCLTFR 317
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,097,249
Number of Sequences: 28952
Number of extensions: 252717
Number of successful extensions: 666
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -