Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0402
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.06c |swi1||replication fork protection complex subunit S...    29   0.69 
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c...    27   2.1  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    26   4.9  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.5  

>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
 Frame = +1

Query: 199 YIFTQKREKAIKYILNHVLMSI----ISILNKSISVKNRMFNFGTIRGYKKRAC 348
           Y++ +KR +  K + ++VL S      S++N + +V++R+F+FG    Y+ R C
Sbjct: 516 YLYVKKRRRNQKSVDSNVLESDEDEESSLINANAAVEDRLFDFGR---YESRYC 566


>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 374

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 143 IETENLRFFFMTLRCFFLCIFSHKKEKK 226
           ++  + R  F+ L CFFL +FS   +KK
Sbjct: 44  VDWRDFRLEFVILACFFLYVFSFITQKK 71


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = +1

Query: 238 ILNHVLMSIISI-LNKSISVKNRMFNF---GTIRGYKKRACRTKLPLSLLYAVPRAPAVP 405
           IL   L SI S  LN  ISVKNR+ +F   G +R          +  +   A+ +A  + 
Sbjct: 540 ILKRPLASICSEDLNCLISVKNRLISFETHGFVRLNVVMDALESMISTAQAAMQKAKQIA 599

Query: 406 MQF*SNVALTEN 441
           + F SN+A  E+
Sbjct: 600 INFSSNLATNED 611


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +1

Query: 172  YDTKMFLFMYIFTQKREKAIKYILNHVLMSIISILNKSISVKNRMFNF 315
            YD K++ F   +   R    +  +  +L +  ++L   I ++NR F+F
Sbjct: 3306 YDGKLYPFALQYPATRHSRREERMLQLLGTFNTVLRSKIEIQNRNFSF 3353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,937,336
Number of Sequences: 5004
Number of extensions: 61254
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)