Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0402
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine r...    33   0.21 
Z92973-4|CAE18004.2|  328|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U41014-3|AAK32948.1|  519|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U40798-4|AAA81474.2|  430|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AL032654-1|CAA21717.2|  179|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z99286-1|CAH60792.1|  311|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine
           receptor, class h protein127 protein.
          Length = 331

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 50  FFISCTFYI--FRDVPFSKLHIQLIISTVPTYSIETENLRFFFMTL 181
           +F SCT++I     VP+ +  +  ++  +P YS+ T+ +  F  TL
Sbjct: 150 YFASCTYFIPLLFFVPYQEEAVPYVLKQIPCYSVYTKTVPLFVFTL 195


>Z92973-4|CAE18004.2|  328|Caenorhabditis elegans Hypothetical
           protein Y6G8.4 protein.
          Length = 328

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +2

Query: 11  YFKFYTALENNQFFFISCTFYIFRDVPFSKLHIQLIISTVPTYSIETENLRFFFMTLRCF 190
           YF F+  +       ++    I  +  F K HI LII  +   ++ T     F +TL+ F
Sbjct: 66  YFCFFMVIVIGSVILLTFFSNILSNPSFEKFHIVLIIFLLFGGAVVTIQFLAFIVTLQVF 125

Query: 191 FLCIF 205
            + IF
Sbjct: 126 HVLIF 130


>U41014-3|AAK32948.1|  519|Caenorhabditis elegans Hypothetical
           protein C06G1.1 protein.
          Length = 519

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/44 (27%), Positives = 27/44 (61%)
 Frame = +1

Query: 232 KYILNHVLMSIISILNKSISVKNRMFNFGTIRGYKKRACRTKLP 363
           +Y +N+ L+  +   +++I++K+R  +FG +R  + R    +LP
Sbjct: 228 QYFINYALLGPVEFSSQAITLKHRGNSFGILRQGRTRLNDFRLP 271


>U40798-4|AAA81474.2|  430|Caenorhabditis elegans Hypothetical
           protein R13A1.3 protein.
          Length = 430

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -3

Query: 169 KKSQIFSFDTVRRDSRYNQLNMQF-RKGHISENV 71
           +K +IF+FD + +  RYN++N++  RK  +  +V
Sbjct: 94  QKMKIFTFDPIDQGRRYNKVNLKITRKSSVGVDV 127


>AL032654-1|CAA21717.2|  179|Caenorhabditis elegans Hypothetical
           protein Y52B11A.1 protein.
          Length = 179

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 169 FYDTKMFLFMYIFTQKREKAIKYILNHVLMSIISILNKSISVKNRMFNF--GTIRGY 333
           F  T+  + M  FT K E  +  +LN   + I+ +    I +  R+F +  G  RGY
Sbjct: 93  FVTTRFIISMRDFTSKEEPTLSELLNLFQIVIVIMYTIGIFLVIRLFTYSAGRYRGY 149


>Z99286-1|CAH60792.1|  311|Caenorhabditis elegans Hypothetical
           protein Y7A9C.7 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +2

Query: 11  YFKFYTALENNQFFFISCTFYIFRDVPFSKLHIQ--LIISTVPTYSIETENLRFFFMTLR 184
           YF  +T+             Y+F+    ++ H Q  L+   V  +   T N  F +++  
Sbjct: 24  YFAVFTSSILMSVVLFPLYAYVFK---MNRKHDQETLLFPAVNHFYQMTRNTYFIYLSFI 80

Query: 185 CFFLCIFSHK 214
           CFF   F+HK
Sbjct: 81  CFFCLTFTHK 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,953,759
Number of Sequences: 27780
Number of extensions: 333485
Number of successful extensions: 829
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)