Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0402
         (738 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25040.1 68416.m03129 ER lumen protein retaining receptor, pu...    29   2.4  
At3g12060.1 68416.m01500 expressed protein similar to hypothetic...    28   7.4  
At4g23120.1 68417.m03331 bromo-adjacent homology (BAH) domain-co...    27   9.8  
At4g20470.1 68417.m02986 hypothetical protein                          27   9.8  
At1g40390.1 68414.m04790 hypothetical protein                          27   9.8  

>At3g25040.1 68416.m03129 ER lumen protein retaining receptor,
           putative / HDEL receptor, putative similar to SP|P35402
           ER lumen protein retaining receptor (HDEL receptor)
           {Arabidopsis thaliana}; contains Pfam profile PF00810:
           ER lumen protein retaining receptor
          Length = 215

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 134 TYSIETENLRFFFMTLRCFFLCIFSHKK 217
           TY  E +  R +F+ L CF L +  H+K
Sbjct: 87  TYDREQDTFRHWFLVLPCFLLALLIHEK 114


>At3g12060.1 68416.m01500 expressed protein similar to hypothetical
           protein GB:CAB82953 GI:7340710 from [Arabidopsis
           thaliana]
          Length = 556

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 130 DSRYNQLNMQFRKGHISENVKCTGNE 53
           D+    + +QF+ GH  EN+ C  N+
Sbjct: 124 DTNAKTITIQFQTGHAKENISCPDNK 149


>At4g23120.1 68417.m03331 bromo-adjacent homology (BAH)
           domain-containing protein weak similarity to ES43
           [Hordeum vulgare] GI:1345528; contains Pfam profile
           PF01426: BAH domain
          Length = 360

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 713 DSFDILRGTF*IKKLSEVSLSILQKKC*STYKIEFGTFDS 594
           +SFD+L G     K  E  L +++ KC ++ K + G +DS
Sbjct: 244 ESFDLLTGDSDRDKSLEELLEVVKPKCRTSRKKQAGDYDS 283


>At4g20470.1 68417.m02986 hypothetical protein 
          Length = 140

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 9   NILNFTLL*KIISFFSFPVHFTFSEMCPFRNCI-FN*LYRLSLRTVSKL 152
           ++L F    +  S FS  + F+FS+    R+C+  N +   S+ T+++L
Sbjct: 59  SLLTFFFFFRFSSIFSLSLFFSFSQKSLLRSCLSLNNVAPFSISTITQL 107


>At1g40390.1 68414.m04790 hypothetical protein
          Length = 426

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 211 QKREKAIKYILNH--VLMSIISILNKSISVKNRMFNFGTIRGYKKRACR 351
           +K  K   ++  H   + SI++   K I+V + MF+ G +    K+ACR
Sbjct: 231 KKSFKYFSFLSTHPDFISSILAAWQKEIAVGSFMFSLGELLKEAKKACR 279


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,210,574
Number of Sequences: 28952
Number of extensions: 275881
Number of successful extensions: 555
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)