Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0400
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    30   0.19 
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    30   0.25 
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    27   2.3  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   2.3  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   3.1  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    26   3.1  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    26   4.1  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    25   5.4  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    25   7.2  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   9.5  
SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces pom...    25   9.5  
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom...    25   9.5  

>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 124 TWLKKNGVRRKKELALAVFSDTGRGVLTKKRIRPGDELISLPLNLLL 264
           +W+K  G      L  +V  D G  VL    I     L+ LP N+L+
Sbjct: 12  SWVKSKGAFVHPSLEFSVIPDAGSCVLANNDINENTVLLKLPPNILI 58


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = +3

Query: 243 LTFKLTINVSTILMDRAFCSIFLENKIPCLSTYKKTVSFQSLLAFYLTYLKAQGIKTKWA 422
           L   +T N+S   +   F SIF  + I  L  YK  +S    + + +  L   G++  W+
Sbjct: 3   LKHSVTYNLS-FFISFTFSSIFFSSLILFL-VYKSVLSKLFFIKYLMLNLTKVGLRRFWS 60

Query: 423 HLPKKFAPR 449
             P++ AP+
Sbjct: 61  QSPRRNAPK 69


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 188 VSLNTARANSFFRLTPFFLSQVFNNINSSFA 96
           ++ NT   +SF    P F +Q+FNN+   +A
Sbjct: 451 IAANTLLRSSFGAAFPLFTTQMFNNLGIGWA 481


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 506 ISXSTLHFISFGKKYGTVYSWGK 438
           IS S  H ++   K+G++YSWGK
Sbjct: 252 ISVSHTHSLAL-TKFGSIYSWGK 273


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 166  ALAVFSDTGRGVLTKKRIRPGDELISLPLNLLLMYPQS 279
            AL VFS    GVL+  R  P   L+ L L+  +   QS
Sbjct: 1137 ALVVFSSAFFGVLSAVRGNPNSGLVGLSLSYAVQITQS 1174


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 406 LKQSGHIYLKNLPQEYTVPYFLPNEI 483
           LK    +YLKNL Q Y + + L  E+
Sbjct: 595 LKSKKELYLKNLNQRYQIAHELEQEL 620


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -3

Query: 519 NHHLNLXIYVAFYFVRQ-KIWYSIFLGQIF*VNVPTLF*YLELSDMS-NKMLIVTETT 352
           N   NL I     +  Q KIW +I L     +    L  YL++SD+S N+ L V++ T
Sbjct: 75  NKWFNLEIVETELYAEQFKIWKNIELSPSRKIPPMVLHTYLDISDLSKNQTLSVSDGT 132


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 480

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 38 WDVQNEKDVRKFHVVS 85
          WD+ NEK  R  H++S
Sbjct: 33 WDIYNEKTRRMIHIIS 48


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 287 VHQDCGYINSKFKGKLISSSP 225
           + QDC YI+SK  G   S SP
Sbjct: 359 IAQDCSYISSKTNGGGPSDSP 379


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 185 SLNTARANSFFRLTPFFLSQVFNNINS 105
           S  TA  +S + ++P++L+   NN+ S
Sbjct: 280 SNGTATNSSIYEISPYYLTSFDNNVRS 306


>SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 448 LGANFLGKCAHFVLIP*AFRYV 383
           L  N L +C+H+V IP   +YV
Sbjct: 262 LRTNILTQCSHYVSIPGGDKYV 283


>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 121 NTWLKKNGVRRKKELALAVFSDTGRGVLTKKRIRPGDEL 237
           N  L ++G   + +L  AVF D G+  L    I P   L
Sbjct: 56  NEVLHEDGTLNRAKLGQAVFQDAGKRSLLNSIIHPAVRL 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,275,806
Number of Sequences: 5004
Number of extensions: 46913
Number of successful extensions: 111
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)