Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0400
         (536 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0671 - 31076463-31076610,31077060-31077202,31077758-310779...    32   0.33 
07_03_0529 - 19107949-19108152,19108857-19109147,19109817-191099...    29   3.1  
03_01_0481 - 3683912-3684694,3684811-3685107,3685199-3685414,368...    29   3.1  
01_06_1625 + 38729803-38731115,38731202-38731391,38731472-387315...    28   4.1  
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948...    28   4.1  
01_06_1842 - 40278875-40280131                                         28   5.4  
01_03_0014 + 11655216-11655287,11657833-11658048,11659848-116619...    27   7.2  

>01_06_0671 -
           31076463-31076610,31077060-31077202,31077758-31077963,
           31078119-31078644,31078753-31078854,31079572-31079637,
           31079710-31079822,31080260-31080345,31081007-31081146
          Length = 509

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 73  SRSFCTCGANEELILLNTWLKKNGVRRKKELALAVFSDTGRG 198
           +R++C+   +E+L+L  +W K + V+R  EL   V     RG
Sbjct: 243 ARTYCSSNEDEDLMLEQSWQKYDSVKRNAELENPVKHSNTRG 284


>07_03_0529 -
           19107949-19108152,19108857-19109147,19109817-19109939,
           19110019-19110306
          Length = 301

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -2

Query: 178 IPPEPILSSVLHHFS*AKYLIILILRLRHKCRNYVKFSDVFFVLYVPFV*CCLITLR 8
           I P+ I   VLHH       +   +RL HK    +K+    FV+  P     +ITL+
Sbjct: 117 IVPDEIKGRVLHHSFPVSLFLPRNVRLEHKTLKLLKYWTWQFVVVRPICAILMITLQ 173


>03_01_0481 -
           3683912-3684694,3684811-3685107,3685199-3685414,
           3685503-3685829
          Length = 540

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 32  YKWDVQNEKDVRKFHVVSALVAQTKN 109
           +KW ++N+K  R + ++ A V Q KN
Sbjct: 35  HKWSLRNQKGPRSWPIIGATVEQLKN 60


>01_06_1625 +
           38729803-38731115,38731202-38731391,38731472-38731504,
           38731582-38732199,38732304-38733011
          Length = 953

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = -1

Query: 251 KGKLISSSPGRILFFVSTPRPVSLNTARANSFFRLTPFFLSQVFNNINSSFAPQVQKLRE 72
           KG  + S  G++L  +S   PV+ +   AN+F  L  F   Q+   + +   PQ  +L +
Sbjct: 708 KGVEMLSRAGKLLPLISPSVPVASDQLEANNFLYLHTFNSYQLMGRMGTPAHPQQLQLIK 767

Query: 71  IF 66
            F
Sbjct: 768 NF 769


>01_03_0303 +
           14792842-14792949,14793659-14793760,14794657-14794800,
           14794906-14794986,14795078-14795147,14795267-14795337,
           14795427-14795594,14796030-14796074,14796449-14796511,
           14796594-14796869,14797858-14797971,14798099-14798225,
           14798315-14798484,14798743-14798841,14799577-14799630,
           14801487-14801522,14801741-14801844,14801952-14802186,
           14802377-14802609,14802846-14803346,14803422-14803716,
           14805796-14805881,14806952-14807064,14807303-14807385,
           14808014-14808866,14809215-14809364,14809963-14811146
          Length = 1854

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = +3

Query: 261 INVSTILMDRAFCSIFLENKIPCLSTYKKTVSFQSLLAFYLTYLK 395
           I+ S IL D A    FL+  +     YK T+ FQSLL F+L  L+
Sbjct: 245 IHGSCILADVARTLHFLQQMLEYYQHYKITLHFQSLL-FWLVVLR 288


>01_06_1842 - 40278875-40280131
          Length = 418

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 40  GRTKRKRRQKISRSFCTCGANEELILLNTW 129
           G  + K R+K+ R   + G N ELI +N W
Sbjct: 144 GGGESKDRKKVERRVSSVGGNGELININIW 173


>01_03_0014 +
           11655216-11655287,11657833-11658048,11659848-11661912,
           11662966-11663013,11663081-11663328,11663429-11663558,
           11663707-11663983,11664102-11664180,11664311-11664397,
           11664586-11664618
          Length = 1084

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 406 LKQSGHIYLKNLPQEYTVPYFLPNEI 483
           L+ +GH+ L+ +   Y++ YF  NE+
Sbjct: 123 LQTNGHVVLQRVDNNYSLRYFTKNEV 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,915,306
Number of Sequences: 37544
Number of extensions: 267533
Number of successful extensions: 567
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)