Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0400
         (536 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24610.1 68414.m03096 SET domain-containing protein low simil...    32   0.28 
At5g53640.1 68418.m06663 F-box family protein contains F-box dom...    30   0.85 
At5g50280.1 68418.m06226 pentatricopeptide (PPR) repeat-containi...    28   4.5  
At1g27430.1 68414.m03343 GYF domain-containing protein contains ...    28   4.5  

>At1g24610.1 68414.m03096 SET domain-containing protein low
           similarity to SP|Q43088 Ribulose-1,5 bisphosphate
           carboxylase/oxygenase large subunit N-
           methyltransferase, chloroplast precursor (EC 2.1.1.127)
           {Pisum sativum}; contains Pfam profile PF00856: SET
           domain
          Length = 476

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 15/48 (31%), Positives = 29/48 (60%)
 Frame = +1

Query: 127 WLKKNGVRRKKELALAVFSDTGRGVLTKKRIRPGDELISLPLNLLLMY 270
           W+K+ G      + L+  +  G G+++ ++I PG +LISLP ++ L +
Sbjct: 39  WIKREGGFVHHAVKLSQETQFGIGLISTEQISPGTDLISLPPHVPLRF 86



 Score = 31.5 bits (68), Expect = 0.37
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 427 YLKNLPQEYTVPYFLPNEIKCNVDXEI*MVISNQKC 534
           Y+ NLP+ YTVP F P E   N+     +   N++C
Sbjct: 133 YISNLPETYTVPIFFPGEDIKNLQYAPLLHQVNKRC 168


>At5g53640.1 68418.m06663 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 917

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 291 AFCSIFLE-NKIPCLSTYKKTVSFQSLLAFYLTYLKAQGIKTKWAHLPKKFAPRIY 455
           +FC  + + N++ C++  K T+S      FYL        K K  HL  +F P+ +
Sbjct: 79  SFCDRYFDSNRVLCINKLKLTISENEEDGFYLKSWIDAAAKRKIQHLDVQFLPQFH 134


>At5g50280.1 68418.m06226 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 723

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 76  RSFCTCGANEELILLNTWLKKNGVR 150
           +SFC  G  EE +++ T ++K G+R
Sbjct: 352 KSFCDEGLKEEALVIQTEMEKKGIR 376


>At1g27430.1 68414.m03343 GYF domain-containing protein contains Pfam
            profile: PF02213 GYF domain
          Length = 1531

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +1

Query: 16   LLSNIIQMGRTKRKRRQKISRSFCTCGANEELILLNTWLKKNGVRRKKE 162
            LLS II  GR+ +   Q  S  F   G N++   +NTW   N V  K E
Sbjct: 1258 LLSGIIDAGRSTQNETQAFSNMF---GMNKDANDINTW---NNVPPKNE 1300


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,602,145
Number of Sequences: 28952
Number of extensions: 232494
Number of successful extensions: 565
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)