Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0399
         (757 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC009274-1|AAH09274.1|  422|Homo sapiens REX4, RNA exonuclease 4...    33   1.1  
AL158826-21|CAI12849.1|  422|Homo sapiens REX4, RNA exonuclease ...    33   1.1  
AL158826-19|CAI12848.1|  374|Homo sapiens REX4, RNA exonuclease ...    33   1.1  
AL158826-18|CAI12845.1|  189|Homo sapiens REX4, RNA exonuclease ...    33   1.1  
AK025493-1|BAB15152.1|  422|Homo sapiens protein ( Homo sapiens ...    33   1.1  
AF295774-1|AAG02123.1|  422|Homo sapiens XPMC2H protein.               33   1.1  
AF273304-1|AAF98162.1|  422|Homo sapiens XPMC2 protein protein.        33   1.1  

>BC009274-1|AAH09274.1|  422|Homo sapiens REX4, RNA exonuclease 4
           homolog (S. cerevisiae) protein.
          Length = 422

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +3

Query: 534 AVSIDCKSIGVESSEGIRNYPASVAIVNEDKICVYNAVINP 656
           A+++DC+ +GV   +G  +  A V+IVN+   CVY+  + P
Sbjct: 243 ALALDCEMVGV-GPKGEESMAARVSIVNQYGKCVYDKYVKP 282


>AL158826-21|CAI12849.1|  422|Homo sapiens REX4, RNA exonuclease 4
           homolog (S. cerevisiae) protein.
          Length = 422

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +3

Query: 534 AVSIDCKSIGVESSEGIRNYPASVAIVNEDKICVYNAVINP 656
           A+++DC+ +GV   +G  +  A V+IVN+   CVY+  + P
Sbjct: 243 ALALDCEMVGV-GPKGEESMAARVSIVNQYGKCVYDKYVKP 282


>AL158826-19|CAI12848.1|  374|Homo sapiens REX4, RNA exonuclease 4
           homolog (S. cerevisiae) protein.
          Length = 374

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +3

Query: 534 AVSIDCKSIGVESSEGIRNYPASVAIVNEDKICVYNAVINP 656
           A+++DC+ +GV   +G  +  A V+IVN+   CVY+  + P
Sbjct: 228 ALALDCEMVGV-GPKGEESMAARVSIVNQYGKCVYDKYVKP 267


>AL158826-18|CAI12845.1|  189|Homo sapiens REX4, RNA exonuclease 4
           homolog (S. cerevisiae) protein.
          Length = 189

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +3

Query: 534 AVSIDCKSIGVESSEGIRNYPASVAIVNEDKICVYNAVINP 656
           A+++DC+ +GV   +G  +  A V+IVN+   CVY+  + P
Sbjct: 150 ALALDCEMVGV-GPKGEESMAARVSIVNQYGKCVYDKYVKP 189


>AK025493-1|BAB15152.1|  422|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21840 fis, clone HEP01804. ).
          Length = 422

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +3

Query: 534 AVSIDCKSIGVESSEGIRNYPASVAIVNEDKICVYNAVINP 656
           A+++DC+ +GV   +G  +  A V+IVN+   CVY+  + P
Sbjct: 243 ALALDCEMVGV-GPKGEESMAARVSIVNQYGKCVYDKYVKP 282


>AF295774-1|AAG02123.1|  422|Homo sapiens XPMC2H protein.
          Length = 422

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +3

Query: 534 AVSIDCKSIGVESSEGIRNYPASVAIVNEDKICVYNAVINP 656
           A+++DC+ +GV   +G  +  A V+IVN+   CVY+  + P
Sbjct: 243 ALALDCEMVGV-GPKGEESMAARVSIVNQYGKCVYDKYVKP 282


>AF273304-1|AAF98162.1|  422|Homo sapiens XPMC2 protein protein.
          Length = 422

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +3

Query: 534 AVSIDCKSIGVESSEGIRNYPASVAIVNEDKICVYNAVINP 656
           A+++DC+ +GV   +G  +  A V+IVN+   CVY+  + P
Sbjct: 243 ALALDCEMVGV-GPKGEESMAARVSIVNQYGKCVYDKYVKP 282


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,572,029
Number of Sequences: 237096
Number of extensions: 1588115
Number of successful extensions: 2164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2164
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9127122082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)