Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0399
         (757 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016683-3|AAB66193.1|  497|Caenorhabditis elegans Hypothetical ...    28   8.2  
AC006664-1|AAF39902.2|  298|Caenorhabditis elegans Serpentine re...    28   8.2  

>AF016683-3|AAB66193.1|  497|Caenorhabditis elegans Hypothetical
           protein K09F6.2 protein.
          Length = 497

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 240 NSKSKLIYFYFFFSFSTVRIYL*FNEYVF 154
           NS SKL++F FFF FS    +  F  ++F
Sbjct: 468 NSLSKLVFFCFFFHFSLNVFFCCFVIFLF 496


>AC006664-1|AAF39902.2|  298|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 40 protein.
          Length = 298

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -3

Query: 644 SVINAYLVLVYDSHRRGVISDT---FRGFHTD 558
           SVIN YLVL++ S RR   S+    F  FH D
Sbjct: 19  SVINVYLVLMFRSQRRHQTSELTQFFYRFHLD 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,719,573
Number of Sequences: 27780
Number of extensions: 280152
Number of successful extensions: 646
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)