Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0399
         (757 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf...    28   5.8  
At3g15080.1 68416.m01907 exonuclease family protein contains exo...    28   5.8  
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec...    28   7.7  

>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 709

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -3

Query: 500 LLNKTIYCTP*EKSRQSI*DQLTTIKSF 417
           +L+KT  CT  E +R SI  QLT ++SF
Sbjct: 210 VLDKTEECTDGESTRSSIRRQLTRVQSF 237


>At3g15080.1 68416.m01907 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 275

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +3

Query: 525 MADAVSIDCKSIGVESSEGIRNYPASVAIVNEDKICVYNAVINP 656
           + D V++DC+ +GV  S+G ++    V +VN+    +Y+  + P
Sbjct: 80  LTDEVAMDCEMVGV--SQGTKSALGRVTLVNKWGNVLYDEFVRP 121


>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
           receptor (PEX7) identical to peroxisomal targeting
           signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
           thaliana]; WD-40 repeat protein family member; contains
           6 WD-40 repeats (PF00400); similar to peroxismal
           targeting signal 2 receptor (PTS2R) (Peroxin-7)
           (PEX7)(SP:O00628) [Homo sapiens]
          Length = 317

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 594 PASVAIVNEDKICVYNAVINPRN 662
           PASV    E   CVY AV NP++
Sbjct: 139 PASVRTFKEHAYCVYQAVWNPKH 161


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,482,179
Number of Sequences: 28952
Number of extensions: 241955
Number of successful extensions: 425
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)