Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0398
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    29   0.69 
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po...    28   1.6  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   3.7  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    26   4.9  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    26   6.4  
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    25   8.5  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   8.5  

>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 541 LNLLTDGRLRHLIYHKHIADSMKEDIQYSGTFSLHGNIPIS 663
           ++L+ DGRL HLI +    D +   +Q   +F+L   + IS
Sbjct: 289 ISLMIDGRLHHLISYYTPEDVLNGKLQTPSSFNLFQQLTIS 329


>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 368

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 628 HYIECPLSCYQRYAYDISDDVIDHQLISSIYPRNLQNLKL 509
           H   C    Y  Y   + DD +D   ISS +P++ + +KL
Sbjct: 61  HCAPCKPKAYGSYEELVKDDKVDIVYISSTHPQHYEVVKL 100


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 580 YHKHIADSMKEDIQYSGTFSLHGNIPISCGKWNHLSYH 693
           Y +   DS  + +Q+  +  L GN+  S G  + L YH
Sbjct: 380 YEREYVDSFYDFLQFMTSSPLGGNMACSAGLTSLLGYH 417


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -2

Query: 695 KWYERWFH 672
           KWYE+WFH
Sbjct: 567 KWYEKWFH 574


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 431 EDGQDGKVKYYNYTYGLPDCEA 496
           E G D K K+Y   YGL D ++
Sbjct: 447 EKGLDNKEKFYGIDYGLEDLDS 468


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 17/68 (25%), Positives = 26/68 (38%)
 Frame = +2

Query: 254 LSPKTMHAKVADSDLNEISERQYAVRINKCCEHNEIMVDFVCRLAVNYNQSVWEPHFKTE 433
           + P T + +    D   I +R   ++IN+  +H   + DFV           W       
Sbjct: 1   MKPNTTNLRNECWDTFSIPKRSQNIKINQSTKHQRSISDFVGTAGPGRQVGNWIIKKTIG 60

Query: 434 DGQDGKVK 457
            G  GKVK
Sbjct: 61  AGSMGKVK 68


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 553  TDGRLRHLIYHKHIADSMKEDIQYSGTFSLHGNIPISCGKWNHLSYHFIWQN 708
            +DG  R  IYH    +S    I+ +  +S+H   P+S  K+N  S    W++
Sbjct: 1941 SDGIQRSQIYHMSPEESCSLPIETAYYYSIHIR-PVSEFKFNWTSEAISWKD 1991


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,882
Number of Sequences: 5004
Number of extensions: 62322
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)