Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0398
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16470| Best HMM Match : EGF (HMM E-Value=1.7e-06)                   29   5.2  
SB_2596| Best HMM Match : Extensin_2 (HMM E-Value=0.083)               28   6.9  
SB_37218| Best HMM Match : Keratin_B2 (HMM E-Value=4)                  28   9.1  
SB_26664| Best HMM Match : I-set (HMM E-Value=7.6e-06)                 28   9.1  
SB_2871| Best HMM Match : TSP_C (HMM E-Value=8e-11)                    28   9.1  

>SB_16470| Best HMM Match : EGF (HMM E-Value=1.7e-06)
          Length = 484

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
 Frame = +1

Query: 547 LLTDG--RLRHLIYHKHIADSMKEDIQYSGTFS--LHGNIPI 660
           + T+G  RL HLI H+   + +   I+ SGT S  ++GNIPI
Sbjct: 300 MATEGKTRLNHLIKHQKYEEVVYHLIRNSGTSSYIVNGNIPI 341


>SB_2596| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
          Length = 896

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +2

Query: 320 YAVRINKCCEHNEIMVDFVCRLAVNYNQSVWEPHFKTEDGQDGKVKYYNY 469
           Y V+I KCC    + +  VC  A       + P  +T    DG+ K YNY
Sbjct: 484 YNVKIQKCCFGRVVPLRTVCEKAFTCGHRSYNP--RTSRCCDGR-KVYNY 530


>SB_37218| Best HMM Match : Keratin_B2 (HMM E-Value=4)
          Length = 181

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 503 TV*PHSLVIHMCNCNISPFH-LVHLRF*NVAPI 408
           +V P  +V+HMC  ++ PF  +VH+   +V P+
Sbjct: 145 SVKPFGVVVHMCRVSVKPFGVVVHMCRVSVKPV 177


>SB_26664| Best HMM Match : I-set (HMM E-Value=7.6e-06)
          Length = 434

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 135 QAFQRDNKLLFRSLTKIDN*ISVLRNADTMYLLIVFTLLV 254
           +AF RD+ LL  S  K D+ + + R ++ + +  VFT LV
Sbjct: 266 RAFVRDDSLLISSTRKADSGMYICRASNDLGVTEVFTQLV 305


>SB_2871| Best HMM Match : TSP_C (HMM E-Value=8e-11)
          Length = 326

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +1

Query: 523 GDSEDKLNLLTDGRLRHL---IYHKHIADSMKEDIQYSGTFSLHGN 651
           G  + K      GR+ H    I H H+AD + ED++Y GT  ++ N
Sbjct: 42  GKCDAKQMFTVFGRVAHFRNWIDH-HMADQVYEDVEYKGTMFVNTN 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,923,688
Number of Sequences: 59808
Number of extensions: 437137
Number of successful extensions: 1004
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)