Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0395
         (326 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    30   0.077
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    25   2.2  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   2.9  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    25   3.8  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    23   8.8  
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||...    23   8.8  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    23   8.8  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 30.3 bits (65), Expect = 0.077
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = +1

Query: 94  PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVAT 243
           PP G  T        P  T   + PP   ST S G    P  +  TS  T
Sbjct: 292 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTT 341



 Score = 30.3 bits (65), Expect = 0.077
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = +1

Query: 94  PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVAT 243
           PP G  T        P  T   + PP   ST S G    P  +  TS  T
Sbjct: 346 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTT 395


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 166 PPSATSTFSHGQGDEPKATNGTS 234
           PP++TS  S+G G  P+   G+S
Sbjct: 420 PPTSTSVSSYGLGKTPQPAYGSS 442


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 89  SAPPVVATLTSSIPNRSHRGPGAVPFHQ-AQRALSATDK 202
           + P  +A  TS+IPN    GP   P  Q AQ A  ++ K
Sbjct: 16  AVPKSLAGSTSNIPNELFVGPDGRPLSQNAQGASKSSSK 54


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 174 AWWNGTAPGPRWLRFGIEDVSVATTGGAE 88
           A W+  A  PR L++G  D S  TTG  E
Sbjct: 384 AIWSLNAQIPRTLQYGNADCSCWTTGCGE 412


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 127 SEPEPPRTGRRAVPPSATST 186
           + P PP+ G    PP+A+ T
Sbjct: 924 ASPPPPKVGETYHPPTASGT 943


>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = -1

Query: 221 VAFGSSPCPWLKVLVALGGTARRPVLGGSGSESKMLV 111
           V F S P  W +  V  G      VLG SGS    LV
Sbjct: 76  VGFASLPNQWHRRCVRQGFNFNVLVLGESGSGKSTLV 112


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 44  STLASMTELVYQAGCSAPP 100
           +T +S+TEL Y    S PP
Sbjct: 691 TTKSSLTELAYNTNVSLPP 709


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,127,262
Number of Sequences: 5004
Number of extensions: 19359
Number of successful extensions: 71
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)