Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0395
(326 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07) 28 1.6
SB_54151| Best HMM Match : PAN (HMM E-Value=0.00084) 28 2.1
SB_44729| Best HMM Match : SET (HMM E-Value=0) 27 2.7
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.7
SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.7
SB_21364| Best HMM Match : Homeobox (HMM E-Value=0.27) 27 3.6
SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5) 27 4.8
SB_47749| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.068) 27 4.8
SB_56123| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.3
SB_36861| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.3
SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16) 26 6.3
SB_40568| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.3
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.3
SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07) 26 8.3
SB_50281| Best HMM Match : Utp21 (HMM E-Value=1.1) 26 8.3
SB_28792| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.3
>SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07)
Length = 754
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +1
Query: 85 VLRPPGGGHTNIFDSEPEPPRTGRRAVPPSAT 180
V P F E EPP+ R+ PPS T
Sbjct: 318 VTTSPSNARRRFFGFETEPPQASRQCSPPSRT 349
>SB_54151| Best HMM Match : PAN (HMM E-Value=0.00084)
Length = 326
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = -3
Query: 252 LTGCRY*SAVGRF-RLISLSVAESARCAWW--NGTAPGPRWLRFGI 124
L G + A G F RL + CA W NGT PG W ++G+
Sbjct: 235 LDGVTFPDACGSFVRLPEDDSILTRNCAKWGSNGTLPGGEWGKYGM 280
>SB_44729| Best HMM Match : SET (HMM E-Value=0)
Length = 1112
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 289 CWICGSGLSLGVTDRXSLLKC 227
C+ICG G L + DR LKC
Sbjct: 978 CFICGDGGQLIMCDRSGCLKC 998
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/55 (29%), Positives = 21/55 (38%)
Frame = +1
Query: 64 GARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNG 228
G ++ PP GG + P G VP +AT G P AT+G
Sbjct: 919 GGNETAPTATPPSGGGNETAPTATPPSGVGNETVP-TATPPSGSGNETAPTATSG 972
>SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2353
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 124 DSEPEPPRTGRRAVPPSATSTF 189
+ EP PPRT R+ PPS +S +
Sbjct: 2020 EREPLPPRTKMRSRPPSMSSIY 2041
>SB_21364| Best HMM Match : Homeobox (HMM E-Value=0.27)
Length = 118
Score = 27.1 bits (57), Expect = 3.6
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +2
Query: 41 HSTLASMTELVYQAGCSAPPVVATLTSSIPNRSHRGPGAVPFHQAQRALSATDKEMSRKR 220
H+T ASM + +Y+ + +AT T R +RG H A A AT +++ +R
Sbjct: 51 HATRASMADNIYKVSRATHTTMATNTKLEMRRRYRGHQEKVNH-ATHATVATKLKLTMRR 109
>SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5)
Length = 635
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = +1
Query: 73 LSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPK 216
L+S + R P G +F P+ PR + P ++ G +P+
Sbjct: 522 LASCISRKPSGSSRRVFPGNPQDPRVVFFSKPSGSSRRVFPGNPQDPR 569
>SB_47749| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.068)
Length = 814
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 55 LNDGARLSS-RVLRPPGGGHTNIFDSEPEP 141
++DG ++S RV GGH NI DS P
Sbjct: 204 ISDGMPITSVRVFARRSGGHDNILDSATSP 233
>SB_56123| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 136 EPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATXGQ 252
+P R G +PP +F H + P+ G+++ T Q
Sbjct: 38 KPTRRGCHVLPPDPIPSFDHEELLTPREDGGSNLHTANQ 76
>SB_36861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 791
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +2
Query: 44 STLASMTELVYQAGCSAPPVVATLTSSIPNRSHRGPGAVPFHQAQRALSATDKEMSRKRP 223
S LA++T +G + V+ L R+ PG + + +SA M+ ++P
Sbjct: 68 SKLATVTSSTAMSGTTPEAVLKALREKQAKRTGNLPGTPSWMMERPYMSADYVSMAEEKP 127
Query: 224 TA 229
TA
Sbjct: 128 TA 129
>SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16)
Length = 411
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 103 GGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPK 216
G NI D+EPEP +P T + +EPK
Sbjct: 167 GTEVNIIDNEPEPATISPEPIPEETTQPTT--TDEEPK 202
>SB_40568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 240
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +1
Query: 91 RPPGGGHTNIFDSEPEPPRTGRRAVPPSATST 186
R P TN DS P + R PP TST
Sbjct: 162 RLPEAPQTNPEDSSPGNRKAANRETPPPGTST 193
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 233 EVPLVAFG--SSPCPWLKVLVALGGTARRPVLGG 138
++P AF S+ P + VL +GG RP LGG
Sbjct: 555 QIPSEAFDDPSAQGPVMAVLAVIGGVDSRPRLGG 588
>SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)
Length = 2435
Score = 25.8 bits (54), Expect = 8.3
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +1
Query: 76 SSRVLRPPGGGHTNIFDS---EPEPPRTGRRAVPPSATSTFSHG 198
SSR L PG H+ + E PR R + PP T S+G
Sbjct: 1989 SSRELLAPGERHSTVPSKAACEYPGPRAKRNSAPPDLQPTTSNG 2032
>SB_50281| Best HMM Match : Utp21 (HMM E-Value=1.1)
Length = 549
Score = 25.8 bits (54), Expect = 8.3
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +1
Query: 97 PGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATXGQ 252
PG +T ++P P GR PP TST S+ + T G GQ
Sbjct: 283 PGNNYTQ---NKPFLPGRGRGYNPPRTTSTNSNIAKKSSRGTKGLEKTGVGQ 331
>SB_28792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +1
Query: 97 PGGGHTNIFDSEPEPPRTGRR-AVPPSATSTFSHGQGDEPKATNGTSVAT 243
P H D P P R +PP + +T G E AT G +++
Sbjct: 134 PSDSHATRDDGMPPDPHATRDDGMPPDSHATRDDGMPSESHATRGDGMSS 183
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,083,005
Number of Sequences: 59808
Number of extensions: 174319
Number of successful extensions: 599
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 450550116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -